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Name : clpC (HMPREF9228_0514) Accession : YP_005582405.1 Strain : Bifidobacterium breve ACS-071-V-Sch8b Genome accession: NC_017218 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : - COG ID : - EC number : - Position : 608498 - 611089 bp Length : 2592 bp Strand : + Note : - DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGAGGACTCTCCAGCACAACTA CATCGGCACCGAACACCTGCTGCTCGGCCTGATCCGAGAGGGTGAGGGCGTGGCCGCCAAGGCACTCGCCTCGAAGGGCG TGGAGTTGGACGCCACCCGCAAGCAGGTCGAAGAGATGATCGGCAAGGGCAACGCGGCCCCGAACGGGCACATCCCCTTT ACCCCGCATGCCAAGCAGGTGCTGGAGTTCTCGTTGCGTGAGGCTTTGCAGTTGGGCCACAGCTACATCGGCACTGAGCA TATTCTGCTCGGCTTGATTCGCGAGGGTGAAGGCGTGGGCACTCAGGTGCTCATCAAGATGGACGTTGATTTGGGCGAGC TGCGCAGCGCAACCATCGATATGATTCGCGGCAACTCCGGCACCTCCACTGACGGCAAGGGCGATTTGGCCAACGCCGGT GGCGTGGCGGACAAGCAGAACAAGTCCGGTTCCGCCATTCTCGACCAGTTCGGCCGCAACCTGACCGCCGAAGCCGCCGA GGGCAAGTTGGATCCGGTCATCGGCCGTACTAACGAGATCGAGCGCGTTATGGTCGTGCTCTCCCGCCGCACCAAGAACA ACCCGGTGCTGATCGGCGAGCCTGGCGTGGGCAAGACCGCTGTGGTCGAAGGACTGGCCCAGAAGATTCAGGCCGGCGAT GTGCCGGAGACCTTGAAAGGCAAGCAGGTCTACTCGCTGGATCTTGGTTCCATGGTGGCCGGTTCCCGTTACCGTGGTGA TTTCGAGGAGCGTCTGAAGAAGGTCCTGAAGGAAATCAAGACCCGTGGCGACATCGTGCTGTTCATCGACGAGATCCACA CCATCGTGGGTGCCGGCTCTGCCGACGGCGCACTGGGTGCCTCCGATATGTTGAAGCCGATGCTGGCCCGTGGCGAGCTG CAGACCATCGGCGCCACCACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCGCTGGAACGCCGATTCCAGCC CATCCAGGTGCATGAGCCGACCATCGCCGAGACCATTGAAATCTTGAAGGGCCTGCGTTCTCGCTACGAGAACCACCATC ACGTGACCATCACCGATGGTGCGTTGCAGTCTGCCGCAGAGCTTTCCAGCCGCTATATTCAGGATCGCAACCTGCCGGAT AAGGCCATCGATTTGATCGACGAGGCCGGTGCCCGCCTGCGCATCAAGCGTCTGACTGCACCGCCCGAGCTCAAGGAGCT TGACGACAAGATCGCCAAGATCGCCGCCGACAAGGACGAGGCCATCAAGGGCCAGGACTTCGAGAAGGCCGCCGAACTGC GCGACAACCAAGAGAAGTTGGAAGCCGAGCGCAAGGCGAAGGAAGATTCCTGGCGCGAAGGCGAGTCCGACGTCAAGATG GTCGTGGATGAGGACGTGATCGCCGAGGTCATCAGCTCCACCACCGGTATTCCGGTGTTCAAGCTGACCCAGGCTGAGTC CAAGAAGCTGCTCAACATGGAAGCCGAGCTGCACAAGCGCATTATCGGCCAGGATGAGGCGGTGTCCGCCCTGTCCCGCT CCATCCGCCGTACCCGCGTGGGCCTGAAGGACCCGAAGCGCCCGTCCGGTTCGTTCATCTTTGCCGGCCCCACCGGCGTG GGCAAGACCGAGCTGGCCAAGACGCTGGCCGAGTTCCTGTTCGACGATGAGGATGCGCTGATTCGCGTCGATATGTCCGA GTTCTCCGAGAAGTATGCGGCATCGCGTCTCTTTGGTGCGCCTCCGGGATACGTCGGTTATGAGGAGGGCGGCGAGCTCA CCGAGAAGGTGCGCCGCAAGCCGTTCTCCGTGGTGCTGTTCGATGAGATCGAGAAGGCTCACCCGGATATCTTCAACACC TTGCTGCAGGTGCTGGATGATGGCCACTTGACCGATGGTCAGGGCCGTAAGGTGGACTTCAAGAACACCATCATCATCCT GACCACCAACCTCGGTACGCGCGACATCGCCAAGGCCGCCAACACGGGCTTCAACCTGGGCGCCAACAGCGAATCCAGCT ACCAGCGTATGAAGGATCAGGTCAGCTCCGAGCTCAAGCAGCAGTTCCGTCCGGAGTTCCTGAACCGTTTGGACGACATC ATCGTCTTCAAGCAGCTCACCGAGCCGCAGGTGCGTCAGATTGTGGATCTGGATGTCAAGCAGCTCAACGATCGTCTGTT CGACCGCCACATGTCGCTCGAACTTACCGACGCCGCCAAGGATCTGCTCGCGCAGAAGGGCTTTGACCCGCTGCTCGGCG CTCGTCCGCTGCGCCGTGTGATTCAGCGCGACATCGAGGACGCCATCTCCGAGAAGATCCTGATGGGCGACCTCGAAGAC GGTCAGAAGGTTATCGTCGACGCCGAGGGCGAAGGTCTGCTGGGTGAGTTCACCTTCAAGGGCGAGACCTTCGAACAGCC TGAGGCCGAGACGGGGGATTCTGTTTCTGCGGTCGATGGAGAGGCGGGATCTCCCGCGGAAACGGAGTCCGAGCCGTCGA ACGATGGTCCCGTTTCCAACGATGCCGAGTAG Protein sequence : MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTSTDGKGDLANAG GVADKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGD VPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGEL QTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPD KAIDLIDEAGARLRIKRLTAPPELKELDDKIAKIAADKDEAIKGQDFEKAAELRDNQEKLEAERKAKEDSWREGESDVKM VVDEDVIAEVISSTTGIPVFKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTGV GKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNT LLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANSESSYQRMKDQVSSELKQQFRPEFLNRLDDI IVFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLED GQKVIVDAEGEGLLGEFTFKGETFEQPEAETGDSVSAVDGEAGSPAETESEPSNDGPVSNDAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_005582405.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_005582405.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 2e-136 | 51 |
