Gene Information

Name : gbsA (BAXH7_03104)
Accession : YP_005551072.1
Strain : Bacillus amyloliquefaciens XH7
Genome accession: NC_017191
Putative virulence/resistance : Virulence
Product : glycine betaine aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2896382 - 2897854 bp
Length : 1473 bp
Strand : -
Note : COG1012 NAD-dependent aldehyde dehydrogenases

DNA sequence :
ATGAGCAAAACGCTTTATATCGGCGGTGAATGGATCAGTGCAGAAAAAAAGCAGACCCGCCGTATCATCAATCCATTTAA
TCAAGAAGAAATTGCAACGGTATGTGAAGGAGACCGGGACGATGCGGTGAAAGCCATCGCCGCAGCCAGAAAAGCATTTG
ATGAAGGGGAGTGGCCGGTGCTTTCCGGGCTGGAACGCGGCCAGTTTGTTCTGAAAATTGCGGAATTAATCAGACGTGAT
CTGAACGAATTAGCTGAGCTGGAATCGCTTGATACAGGAAAAACAATCGAAGAAAGCAAAGCTGATATGGATGATATCGC
AAATGTATTTCAGTATTATGCCGGTTTGGCGGATAAAGACGGGGGCGAGGTCATCTCATCTCCGATTCCTGATTCCGTAA
GTAAAATCGTCAGAGAGCCCATCGGCGTGTGCGGACAAATTACGCCGTGGAACTATCCGCTCCTTCAGGCGAGCTGGAAA
ATCGCTCCTGCTCTTGCGGCCGGTAATACGATCGTTTTAAAGCCGAGCGAGATTACTCCGCTGACAACCATTAAAGTCTT
TCAATTAATAGAAGAAGCCGGTATTCCAAAGGGAGCCGCCAATCTTGTGCTTGGACCGGGCGCCTCTGTCGGTGACGAGC
TGGCGAGAAACCTAGACGTCGATTTGGTGTCCTTTACGGGCGGAATTGAAACAGGCAAAAAAATTATGCAGGCGGCAAGC
GGCAACGTGAAAAAGATTGCTCTGGAGCTTGGCGGCAAGAATCCGAATATCGTGTTCCAAGACGCTGATCTTGAAACAGC
TGCAGATCAAGCGCTGAACGCCGTGTTTTTCCATGCCGGCCAAGTTTGTTCGGCAGGCTCCCGGCTTTTAGTGGATGAAG
CGATTCATGATGAATTTTTAGCCGAGCTGATCAAGCGTACGAAACGCATCAAATTAGGAAACGGTTTTCATGAAGATACG
GAAAGCGGTCCGCTGATTTCCGCCGAGCATCGGGCCAAAGTTGAAAAATACGTAGAAATCGGAATCGAAGAAGGGGCAAA
GCTGGAAACAGGCGGCAAACGTCCTGATGATCCCGCCCTTCAGAACGGTTTCTTCTATGAACCTACTATTTTTTCAAACT
GCAAGTCTGATATGCGGATTGTCCAAGAGGAGATCTTCGGTCCCGTTTTAACAGTCGAGTCATTTTCTTCTGAAGAAGAG
GTGATCAGACTGGCCAACGATACCATTTACGGGCTGGCCGGGGCGGTATGGTCAAAGGATATTGAAAAATGCGAACGAGT
AGCTCAAAAACTGCGGATGGGAACGGTATGGATCAATGATTTCCACCCGTATTTCGCGCAAGCGCCGTGGGGCGGGTACA
AACAATCGGGCTTCGGCCGCGAACTCGGCAAAATCGGCCTGGAAGAATACACGGAAGTCAAACATATTTACCGCAACACA
AAACCTGCAGCGGTTAACTGGTTTAAAGCATAA

Protein sequence :
MSKTLYIGGEWISAEKKQTRRIINPFNQEEIATVCEGDRDDAVKAIAAARKAFDEGEWPVLSGLERGQFVLKIAELIRRD
LNELAELESLDTGKTIEESKADMDDIANVFQYYAGLADKDGGEVISSPIPDSVSKIVREPIGVCGQITPWNYPLLQASWK
IAPALAAGNTIVLKPSEITPLTTIKVFQLIEEAGIPKGAANLVLGPGASVGDELARNLDVDLVSFTGGIETGKKIMQAAS
GNVKKIALELGGKNPNIVFQDADLETAADQALNAVFFHAGQVCSAGSRLLVDEAIHDEFLAELIKRTKRIKLGNGFHEDT
ESGPLISAEHRAKVEKYVEIGIEEGAKLETGGKRPDDPALQNGFFYEPTIFSNCKSDMRIVQEEIFGPVLTVESFSSEEE
VIRLANDTIYGLAGAVWSKDIEKCERVAQKLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKIGLEEYTEVKHIYRNT
KPAAVNWFKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-75 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 1e-75 42
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 1e-75 42
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 1e-75 42
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 3e-70 42
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-75 42
hpaE AAO17179.1 HpaE Not tested tcd island Protein 6e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gbsA YP_005551072.1 glycine betaine aldehyde dehydrogenase VFG0082 Protein 5e-76 42