Gene Information

Name : BAMTA208_20315 (BAMTA208_20315)
Accession : YP_005543702.1
Strain : Bacillus amyloliquefaciens TA208
Genome accession: NC_017188
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3869365 - 3870048 bp
Length : 684 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGATAAGTTGAAAGGCATCAAGGTGCTGATTGTAGACGATGAGCCGGCGATCATTGATTTTTTAACGATGGGGCTTGT
CAATGAAGGATTTGAAGTGATGTCCGCGGCAGACGGGATGTCGGCAATGAATCTTGTTAAAACATTTCAGCCTCATATTG
CTGTTTTGGACGTTATGATGCCGGGAATGGATGGGCTTGAGCTGTCAAGAATGCTCAAGAAAACAAGCAATACCGCCGTC
ATTATGCTGACCGCGAAGGATGAAGTAGAGCTCCGCGTAAAGGCGCTGATTGAAGGGGCTGATGATTACATGATCAAACC
GTTCAGCTTTGAGGAGCTGCTTGCCCGGATTTACGCAAGAATCCGCAACCAGTTTCCGCATCTTTTTGATGAGGTGGTGC
TCGGCCCTTTCCGAATCGATGACCGGAGCAGAGAGATTCATTACAATGAACAGCCTTTGAAGCTGTCTGCCACCGAATAT
GAACTGCTGAAATTTTTAGTGCTTCGCCACGGGACGGTGCTCAGTAAAACGAGGATTCTCGATCAAGTATGGGGCTATGA
TTTTTACGGGGAAGACAATATCGTCGAGGTGTACATCCGTTCTTTACGCGAAAAGCTGAAAGACAAAGAGCATAAAGTGA
TCCGCACGGTGCGGGGCGCGGGGTACAGGGTGGATCTGGCATGA

Protein sequence : 
MDKLKGIKVLIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVMMPGMDGLELSRMLKKTSNTAV
IMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPHLFDEVVLGPFRIDDRSREIHYNEQPLKLSATEY
ELLKFLVLRHGTVLSKTRILDQVWGYDFYGEDNIVEVYIRSLREKLKDKEHKVIRTVRGAGYRVDLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_002952.2859905.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_002745.1124361.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_009782.5559369.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_002951.3237708.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_002758.1121668.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_009641.5332272.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_013450.8614421.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_007622.3794472.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_007793.3914279.p0 Protein 2e-35 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein NC_003923.1003749.p0 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein VFG0596 Protein 7e-39 41
BAMTA208_20315 YP_005543702.1 two component transcriptional regulator, winged helix family protein VFG1390 Protein 6e-36 41