Gene Information

Name : yydA (BAMTA208_20220)
Accession : YP_005543683.1
Strain : Bacillus amyloliquefaciens TA208
Genome accession: NC_017188
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3853222 - 3853701 bp
Length : 480 bp
Strand : -
Note : COG1576 Uncharacterized conserved protein

DNA sequence :
GTGAATATCAATATTGTGACAATCGGAAAACTAAAAGAAAAATACCTCAAGCAAGGCATTGAAGAATACAAAAAACGACT
CTCAGCCTACGCGAAAATCGACATCATCGAACTCCCGGACGAAAAAGCCCCGGAAAACCTGAGCGACCAAGATATGAAAA
TCGTCAAAGACAAAGAAGGCGAACGCATCCTGGCCAAAATCAGCCCGGACACCCACGTCATCGCCCTCGCCATCGAAGGA
AAGATGAAAACATCCGAAGAACTGGCCGATACAATAGATAAGCTGGCGACTTATGGAAAAAGCAAAATCACCTTCGTCAT
CGGCGGCTCACTCGGCCTAAGCGACGCCGTCATGAAAAGGGCAGACGACAAGCTGTCATTTTCGAAGATGACGTTTCCTC
ATCAGTTGATGCGTCTCATACTAGTTGAGCAGATTTATCGGGCGTTTCGGATTAATCGTGGGGAGCCTTATCATAAGTGA

Protein sequence :
MNINIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGERILAKISPDTHVIALAIEG
KMKTSEELADTIDKLATYGKSKITFVIGGSLGLSDAVMKRADDKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 7e-47 63
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 5e-48 62
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 5e-48 62
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 5e-48 62
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 5e-48 62
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 5e-48 62
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-48 62
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 5e-48 62
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-48 62
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 5e-48 62
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-48 62
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 5e-48 62
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 2e-31 62
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 5e-48 62
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 5e-48 62
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 8e-48 62
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-46 61
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-46 61
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-43 60