Gene Information

Name : epsC (BAMTA208_17445)
Accession : YP_005543134.1
Strain : Bacillus amyloliquefaciens TA208
Genome accession: NC_017188
Putative virulence/resistance : Virulence
Product : UDP-sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3312563 - 3314356 bp
Length : 1794 bp
Strand : -
Note : COG1086 Predicted nucleoside-diphosphate sugar epimerases

DNA sequence :
ATGATTTTTGCATTGGATACGTATCTCGTTTTACTTTCCGTTGTTATAGGATATCAATTTTTTGAGGATTCTTATCACTT
TTATGACTCCGGAGCGCTCCTGCTGACCGCGGTGAGCATGCTGATCAGCCACCATGTATGCGCTTTTATGTTTCACCAGT
ATAAGCAGGTATGGACGTATACGGGAATAGGGGAGCTGCTTGCCCTGCTGAAGGGGATCACTCTGTCCGCAGCGGTGACG
GCCGCCGTTCAATATGGGGTGTTCCACACGATTTTGTTCCGGCTTTTAGCCGTCAGCTGGATGGTTCAGCTATTGTTTAT
CGGAGGCAGCCGGATGATTTCGCGCGTGCTGAAAGAAACGATCGGCAAGAAGCAAAATGACTCTTCACGGGCGCTGATTA
TCGGCGCTGGCGCGGGGGGGACGCTGCTCGCCCGTCAGCTTACGCAGAAAAACGATCTCGGAATCATGCCTGTGGCTTTT
ATTGATGATGACCAGACGAAGCATAAGCTCGAGATTATGGGGCTGCCCGTCATCGGCGGAAAAAAAAGCATTTTGCCGGC
GGTGCAGAGGCTGAGAATTCACCATATCATCATCGCCATTCCGTCTCTGCGAACCCATGAGCTTCAGACTTTATACAAAG
AATGTGTGCAGACGGGCGCCCATATTAAAATCATGCCGCAATTTGATGAGATCCTGCTCGGAACGCAGGCTGCCGGACAC
ATCAGAGATGTAAACGCCGAAGATTTGCTCGGCAGAAAACCGGTCACTCTGGATACGAGCAAAATTTCTGACAGCATAAA
GGGAAAAACGATTCTGGTCACGGGTGCCGGCGGCTCTATCGGTTCTGAGATCTGCCGCCAGATCAGCTCGTTTCGTCCGC
GTGAAATCGTCCTTCTCGGCCACGGGGAAAACAGCATTTATTCCGTGCATGGCGAACTGTCAGCACGCTTTGGGAAAGAG
GTGCTTTTTCACGCGGAGATCGCCGATATTCAGGATAGAGATAAAATCTTTACCTTGATGAAAAAATACGAGCCGCACGT
CGTCTATCATGCGGCTGCCCATAAACATGTGCCGTTAATGGAACATAACCCGGAGGAAGCTGTCAAAAACAACATCCTCG
GCACAAAAAATGTCGCCGAGGCCGCCGATATGTGCGGAACGGAAACGTTCGTGCTGATTTCTTCTGATAAAGCGGTCAAT
CCGGCCAATGTTATGGGGGCGACGAAGCGGTTTGCGGAAATGGTCATCATGAACCTCGGAAAAATCAGCCGCACCAAATT
CGCCGCCGTCCGTTTCGGAAATGTGCTCGGAAGCCGGGGCAGCGTCATTCCGATTTTCAAAAAGCAGATTGCAAAAGGCG
GACCCGTCACCGTCACGCATCCGGCGATGACAAGATATTTTATGACGATCCCCGAAGCGTCAAGACTCGTCATTCAGGCG
GGGGCGCTTGCAAAAGGGCGGCAGATTTTCGTTCTGGATATGGGAGAACCCGTCAAAATCGTCGATCTGGCAAAAAACCT
GATTCATTTATCAGGCTATACGACAGAACAGATTCCTATTGAATTCTCCGGCATCCGGCCGGGAGAAAAGATGTATGAAG
AACTGCTGAATCATAATGAAGTACATACGGAACAGATTTTTCCGAAAATCCATATCGGAAAAGCGGTAGACGGGGATTGG
GCCGTGCTTATCCGCTTTATGGAAGAATTCAGCCGTCTGCCTGAGGAAGAGCTGAGAAAACGGCTGTTTGAGGCAATCGA
ATCAGTACATGAAGAAGCGGCCGCGGGCGTGTGA

Protein sequence :
MIFALDTYLVLLSVVIGYQFFEDSYHFYDSGALLLTAVSMLISHHVCAFMFHQYKQVWTYTGIGELLALLKGITLSAAVT
AAVQYGVFHTILFRLLAVSWMVQLLFIGGSRMISRVLKETIGKKQNDSSRALIIGAGAGGTLLARQLTQKNDLGIMPVAF
IDDDQTKHKLEIMGLPVIGGKKSILPAVQRLRIHHIIIAIPSLRTHELQTLYKECVQTGAHIKIMPQFDEILLGTQAAGH
IRDVNAEDLLGRKPVTLDTSKISDSIKGKTILVTGAGGSIGSEICRQISSFRPREIVLLGHGENSIYSVHGELSARFGKE
VLFHAEIADIQDRDKIFTLMKKYEPHVVYHAAAHKHVPLMEHNPEEAVKNNILGTKNVAEAADMCGTETFVLISSDKAVN
PANVMGATKRFAEMVIMNLGKISRTKFAAVRFGNVLGSRGSVIPIFKKQIAKGGPVTVTHPAMTRYFMTIPEASRLVIQA
GALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQIPIEFSGIRPGEKMYEELLNHNEVHTEQIFPKIHIGKAVDGDW
AVLIRFMEEFSRLPEEELRKRLFEAIESVHEEAAAGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-116 53
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 5e-115 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epsC YP_005543134.1 UDP-sugar epimerase VFG1300 Protein 1e-120 52