Gene Information

Name : ABED_0409 (ABED_0409)
Accession : YP_005537936.1
Strain : Arcobacter butzleri ED-1
Genome accession: NC_017187
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 412642 - 413319 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGACTTCTATGAAGATACTAATAATTGAAGATGATTTAAAAATCATAAACTTTTTAAAAAAAGGTTTAGAAGAAGAGTG
TTACATAGTTGACTTCTCAACAAATGGTGATGAAGGATTGTATCTAGCTAGTATTAACACTTATGATCTAATCTTACTTG
ATATCATGCTTCCAATTAAAGATGGAATTGAAGTATGTAAAAGTCTAAGAAATTCAAATATTCAAACACCGATTATTATG
CTAACTGCAAAAGATTCTATTGAAGATAAAATTAAAGGTTTAGATATTGGAGCAAATGATTATTTAGCAAAACCTTTTTC
CTTTGCAGAACTGCTTGCAAGAATCAGAGTTCAATTAAGAATCACAACTACTACTCAAACAAAACTATCTATTGCAGATT
TAGAACTTGATTTACTAAATAAAACAGCTTCAAGAGCAAATCAAAATATAGTTTTAACAGCTAAAGAGTTTGCACTTTTG
GAATATCTAATAAAAAATAAAAATAGAGTTTTAAGTGAAACAACAATAAATGAAGCACTTTCATCATTTGAAGATTCAAA
TATCAGTAATATTGTAAATGTTTATATTTATAGGTTAAGAAATAAAATTGATAAAAATTTTGAAAATAAACTAATAAAAA
CAGTAAGAGGAATAGGATTTAAAATCAGTGAAGATTAA

Protein sequence : 
MTSMKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIKDGIEVCKSLRNSNIQTPIIM
LTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITTTTQTKLSIADLELDLLNKTASRANQNIVLTAKEFALL
EYLIKNKNRVLSETTINEALSSFEDSNISNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKISED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-44 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABED_0409 YP_005537936.1 two-component response regulator BAC0197 Protein 1e-42 46
ABED_0409 YP_005537936.1 two-component response regulator BAC0125 Protein 5e-44 45
ABED_0409 YP_005537936.1 two-component response regulator BAC0638 Protein 1e-35 45
ABED_0409 YP_005537936.1 two-component response regulator BAC0308 Protein 1e-40 45
ABED_0409 YP_005537936.1 two-component response regulator BAC0347 Protein 6e-43 44
ABED_0409 YP_005537936.1 two-component response regulator BAC0111 Protein 2e-44 44
ABED_0409 YP_005537936.1 two-component response regulator AE016830.1.gene1681. Protein 2e-31 44
ABED_0409 YP_005537936.1 two-component response regulator BAC0083 Protein 8e-42 43
ABED_0409 YP_005537936.1 two-component response regulator NC_007793.3914065.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_002758.1121390.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_010079.5776364.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_002952.2859858.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_007622.3794948.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_003923.1003417.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_013450.8614146.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator NC_002951.3238224.p0 Protein 4e-29 41
ABED_0409 YP_005537936.1 two-component response regulator HE999704.1.gene1528. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABED_0409 YP_005537936.1 two-component response regulator VFG0596 Protein 2e-44 46
ABED_0409 YP_005537936.1 two-component response regulator VFG1390 Protein 1e-37 41