Gene Information

Name : RAM_04025 (RAM_04025)
Accession : YP_005528754.1
Strain : Amycolatopsis mediterranei S699
Genome accession: NC_017186
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 843884 - 844564 bp
Length : 681 bp
Strand : +
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence :
ATGCTCGACGACGTGACGGACAACCAGCGTGAACCGGTCAAGGTGTTCCTCGTCGATGACCACGCGCTGTTCCGCGCCGG
GGTGCGTACCGAGCTCGACTCGATCACCGACGAGGTCCGCGTGGTCGGCGAGGCCGGGTCGGTCGCCGAAGCGGTGGCCG
GTATCGCCCGCACGAAGCCCCAGGTCGTGCTGCTCGACGTCCACATGCCCGACGGCGGCGGCGCCGAAGTGCTGCGCCGC
GTCCGCCCGGAGCTGCCGGACGTGGTGTTCCTGGCGCTGTCGGTCTCGGACGCGGCGGAGGACGTCATCGCGGTCATCCG
CGCGGGCGCCCGCGGCTACGTGACGAAGACGATCTCGTCGAAGGAACTGGTCCGCGCGGTGGTCCGCGTGTCCGACGGCG
ACGCGGTGTTCTCGCCGCGGCTGGCCGGCTTCGTCCTCGACGCGTTCGCCGACCGCCCGGGTTCGGCGCCGATCAACGAC
CCCGAGCTGGACCTGCTGACGCCTCGCGAGCGGGACGTCCTGCGGCTGCTGGCGCGCGGGTACGCGTACAAGGAGATCGC
GTCGGAGCTGTTCATCTCGGTGAAGACGGTGGAGACGCACGTGTCGAGCGTCCTGCGGAAGACCCAGCTTTCGAACCGCT
ACGAGCTCTCCCGCTGGGCCTCCGACCGCCGGCTCGTCTAG

Protein sequence :
MLDDVTDNQREPVKVFLVDDHALFRAGVRTELDSITDEVRVVGEAGSVAEAVAGIARTKPQVVLLDVHMPDGGGAEVLRR
VRPELPDVVFLALSVSDAAEDVIAVIRAGARGYVTKTISSKELVRAVVRVSDGDAVFSPRLAGFVLDAFADRPGSAPIND
PELDLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0600 NP_938974.1 two component system response regulator Not tested Not named Protein 8e-53 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RAM_04025 YP_005528754.1 two-component system response regulator VFG1824 Protein 2e-19 41