Gene Information

Name : RAM_35610 (RAM_35610)
Accession : YP_005535052.1
Strain : Amycolatopsis mediterranei S699
Genome accession: NC_017186
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7669313 - 7670026 bp
Length : 714 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCCGAACCTGCTGGTGGTGGAAGACGACGCGGCGATCGGCAGCGTGCTCGAATCGACCCTGCGACTGCACGGTCACCA
GGTGTGCTGGCGCCGCGACGGGCGGACCGCCCTGCAAGCCGCCGAACCCGGGGATTTCGACCTCGTGCTGCTCGACCTCG
GCCTGCCCGACCTGGACGGCGTCGAGGTCTGCCGCCGCCTGCGGGCCGCGCTGCCCGGCGCGGTGCTGGTCATCCTCACC
GCGCGGCAGGAGGAGATGGACGTCGTCGTCGGCCTCGACGCCGGGGCCGACGACTACCTCACCAAGCCGATCCGGCTGGG
CGAACTGCTCGCCCGGGTGCGGGCGCACCTGCGGCGCGGCGCGCCGGCCGGGGCGCGGCCCCCGGTGACCATCGGCGGGC
TGACCGTCGACATCGCCGGCCGCCGGGCCACCCTGGGCGGGCGTGAAGTGGTGCTGCGGGCCAAGGAGTTCGACCTGCTG
GCCCGGCTGGCCGAGCAGCCCGGCGTCGCGGTCAGCCGGGAGACGCTGATGTCCGAGGTCTGGGACGCGCACTGGTACGG
CTCGACGAAGACGCTGGACGTGCACATCGCGGCGGTGCGCCGCAAGCTCTCGGCTTGTGCATCCCAGCCCGGCGACGAGG
TGCCGCGGATCGTCACCCTGCGCGGGCACGGCTACCGGCTGGAAGACCCGGCGCGCACCGCCGCCGAAGGGTAG

Protein sequence : 
MPNLLVVEDDAAIGSVLESTLRLHGHQVCWRRDGRTALQAAEPGDFDLVLLDLGLPDLDGVEVCRRLRAALPGAVLVILT
ARQEEMDVVVGLDAGADDYLTKPIRLGELLARVRAHLRRGAPAGARPPVTIGGLTVDIAGRRATLGGREVVLRAKEFDLL
ARLAEQPGVAVSRETLMSEVWDAHWYGSTKTLDVHIAAVRRKLSACASQPGDEVPRIVTLRGHGYRLEDPARTAAEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-15 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RAM_35610 YP_005535052.1 two-component system response regulator BAC0083 Protein 4e-19 42
RAM_35610 YP_005535052.1 two-component system response regulator BAC0197 Protein 4e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RAM_35610 YP_005535052.1 two-component system response regulator VFG1389 Protein 2e-20 44
RAM_35610 YP_005535052.1 two-component system response regulator VFG0596 Protein 1e-15 42