Gene Information

Name : RAM_25640 (RAM_25640)
Accession : YP_005533063.1
Strain : Amycolatopsis mediterranei S699
Genome accession: NC_017186
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5574652 - 5575710 bp
Length : 1059 bp
Strand : +
Note : COG4779 ABC-type enterobactin transport system, permease component

DNA sequence :
ATGAGCCTGCTGCACGTGCGGCGCGACCGCGTGACCTTCCGCCTCGCGAAACCCGCGGTGTCCGGTCAGATCCGGCTCCG
GCTGGTGGCCGTCTCGCTCGTGCTCGCCGTGCTGGCGTTCGCGTTGTTTTGCGTGGGCATGACGATCGGCGACGTCCCGC
TCAGCATGTCCGACGTCCTGTCCGCGGTGTTCGGCGGCGGCGACAGCGGCACCGGCTACATCGTGCAGGAGCTGCGGCTG
CCGCGGGCGCTGACCGGGCTGCTGGCCGGGCTCGCGTTCGGCGCGTCCGGCGCGGTGTTCCAGACCATCACGCGCAACCC
GCTGGCCGGCCCGGACCTGATCGGCATCAACGCGGGCGCGGCCACCGCCGTCGTCGCCGGGATCTCCTTCGGCTTCGGCG
GCGGCCTCGGCACCACCACGCTCGGCCTGCTGGGCGGGCTGCTGACCGGCCTGCTCGTGTACGTCCTGGCGTGGCGGCGC
GGCACCACCGGCTACCGGATCATCCTGGTGGGCATCGGCATCTTCGCGATGTGCACCAGCCTGACCGACTACCTGCTCAG
CCGCGCGCAGATCACCGAAGCCCAGGCGTCGATCGGCTGGCTGGTCGGCAACCTCGCCAACCGCGGCTGGGAGCACGTCG
TCCCGCTGGCCGGCGCGCTGGCGGTGCTGCTGCCGCTCGTGCTGGCCCTGTCGCGGTGGATGCGCACGCTGCAGCTCGGC
GACGACGTGGCGGCCGGGCTCGGCACGCCGGTGCAGCCGGTCCGGCTGGGGCTGCTGCTGGCCGGCGCCGGGCTGGTGGC
CTTCGCGACGGCGTCCGCCGGCCCGATCTCGTTCGTCGCGCTGACCGCGCCGCAGATCGCGCAACGCCTGGCGCGCCGGC
CATCCCCGCCGCTCATCGCGTCCGCGCTCACCGGCGCGGTGGTGGTGCTGGGCAGCGACCTCCTGGCCCGCACCCTCACC
GCGTCCCCGCTGCCGGTCGGCATAGTGACCGGCGCGCTCGGCGCCCCGCTGCTGCTCTGGCTGCTGGCCAGGGCCAACCG
ATCCGGCTCCGGAGGCTGA

Protein sequence :
MSLLHVRRDRVTFRLAKPAVSGQIRLRLVAVSLVLAVLAFALFCVGMTIGDVPLSMSDVLSAVFGGGDSGTGYIVQELRL
PRALTGLLAGLAFGASGAVFQTITRNPLAGPDLIGINAGAATAVVAGISFGFGGGLGTTTLGLLGGLLTGLLVYVLAWRR
GTTGYRIILVGIGIFAMCTSLTDYLLSRAQITEAQASIGWLVGNLANRGWEHVVPLAGALAVLLPLVLALSRWMRTLQLG
DDVAAGLGTPVQPVRLGLLLAGAGLVAFATASAGPISFVALTAPQIAQRLARRPSPPLIASALTGAVVVLGSDLLARTLT
ASPLPVGIVTGALGAPLLLWLLARANRSGSGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagB YP_005684489.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 3e-21 43
fagB YP_005680308.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 1e-21 43
fagB YP_005682398.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 3e-21 43
fagB YP_003782431.1 integral membrane protein Not tested PiCp 1 Protein 3e-21 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RAM_25640 YP_005533063.1 iron ABC transporter permease VFG0928 Protein 4e-20 41