Gene Information

Name : RAM_25635 (RAM_25635)
Accession : YP_005533062.1
Strain : Amycolatopsis mediterranei S699
Genome accession: NC_017186
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5573615 - 5574652 bp
Length : 1038 bp
Strand : +
Note : COG0609 ABC-type Fe3+-siderophore transport system, permease component

DNA sequence : 
GTGCGAACAGACCCCGGAGGGATCGCTCTCGAGCGACGCCCGCCACACACGGGCCGCGCGCTCGGTCTGCTGGCCGCTCT
CGGCGTCCTGGTTTTCCTCGGCCTGCTGAGTGTCTGGCTGGGCTCCAAGGAGATTGCGTTCGGCGCCGTCTGGCAGGTCC
TGTGGCACGACGACGGCTCCGCCGACGCCGTGATCATCCACAGTGTCCGGATCCCGCGGACCCTCCTGGCGGTGCTGGTC
GGCGCCGCGCTCGGCCTGGCCGGCACGCTCATGCAGGCGCTGACCCGCAACCCCCTGGCCGACCCGGGACTGCTCGGCGT
CAGCGCCGGGGCCGCGTTCGCCATCGTCTTCTCCATCACCGTGCTCGGCGTGAGCTCCCTCTACGGCTACATCTGGTTCG
CCTTCGCCGGCGCGCTCGCCGCGACCACGGTCGTCTACTTCCTCGGCACCCGGGGCCGCAGCGGCTCGAGCCCGGTCAAG
CTCGCCCTCGCCGGAGCCGCCGTCACGGCCCTGCTCGGCTCGTTCACCAGCGCGATGGTGCTCTCGGACCCGGTGGCGCT
CAACCGGTTCCGGTTCTGGTCGGCCGGTTCGCTCGCCGGTGTCGACAGCGGATCGCTGCTGCGGGTCCTGCCGTTCCTGC
TCGTCGGCGTGGTGCTGGCGATCGCGAGCGGACCCGCGTTGAACAGCCTCGCGCTCGGCGACGACGTCGCGGTCGCGCTC
GGGCGGCGGCTGGGCCCGCTGCGGCTGCGCGGCGCGCTGGCCATCACGCTCCTGACCGGCGCTTCCGTCGCGGTCGCCGG
CCCGATCGTGTTCCTCGGCCTGATCGTCCCGCACGCCGTGCGGTTCGTCATCGGCCCGGACCACCGGTGGCTGCTGCCCT
ACACCGCGGTGCTCGCGCCCTGCCTGCTGCTCGCCGCGGACATCCTCGGCCGGATCATGGCGCGGCCCGGCGAGGTCCGC
GCCGGCGTGATCGTCGCCTTCCTCGGCGCACCTTTCTTCATCTACCTGGTCCGCCGCCGCAAGCTGGTGGAAGCCTGA

Protein sequence : 
MRTDPGGIALERRPPHTGRALGLLAALGVLVFLGLLSVWLGSKEIAFGAVWQVLWHDDGSADAVIIHSVRIPRTLLAVLV
GAALGLAGTLMQALTRNPLADPGLLGVSAGAAFAIVFSITVLGVSSLYGYIWFAFAGALAATTVVYFLGTRGRSGSSPVK
LALAGAAVTALLGSFTSAMVLSDPVALNRFRFWSAGSLAGVDSGSLLRVLPFLLVGVVLAIASGPALNSLALGDDVAVAL
GRRLGPLRLRGALAITLLTGASVAVAGPIVFLGLIVPHAVRFVIGPDHRWLLPYTAVLAPCLLLAADILGRIMARPGEVR
AGVIVAFLGAPFFIYLVRRRKLVEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 1e-22 43
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 1e-22 43
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 1e-22 43
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 1e-22 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RAM_25635 YP_005533062.1 iron ABC transporter permease VFG0926 Protein 2e-32 49