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Name : RAM_22665 (RAM_22665) Accession : YP_005532470.1 Strain : Amycolatopsis mediterranei S699 Genome accession: NC_017186 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein PilB Function : - COG functional category : - COG ID : - EC number : - Position : 4881968 - 4883497 bp Length : 1530 bp Strand : - Note : COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB DNA sequence : ATGAGGCTTCGCACCCAGCCCCGGACCGTCGACCTCCGCACGGTGACCCCGGACCGCGCCGCCGCCGACCTGCTCGGCGA GGCGAAGGCCCGGGAACTCTGCGCGATCCCCCTCGCCGTCCGCGAGGACTCCGTGCTGGTCGCGGTGGCCGACCCGGCCA CCGCCCCGGCGCTGCAGGCGGCGCTCGGCCGCCCGGTGACCGTCGCCGTCGCCGAACGCGCGGACATCCTGGCCACCATC GGCCGCACCTACCGCGCGCTCACCGGCGTCGACCGGCAGGTCAAGGCGTTCGAAGCCCGGGACGCCGTCCGGCGCGACGC GGCCCGCGCCGAGGCGCCGGCGACCGCGAACGACGATGCGCCGGTGGTGCACGTCGTCGCCCTGATGATCAAGCAGGCGC TGCGCGACCGGGCCTCCGACATCCACGTCGAGCCGCAGGCCGAGCGAATCCGCGTCCGCTACCGCATCGACGGCGTGCTC CACGACGTCCTCGACCTGCCCGGCTCGATGGGGCCCGCGGTGACCAGCCGGATCAAGATCCTGGCCGGGATGAACATCGT CGAGCGCCGGCGGCCGCAGGACGGCCAGATCAGCATGGACGTCGAGGACCGGCCGGTGGACATCCGGGTGGCGAGCACGC CGGTGGTCGGCGGCGAAAAGGTCGTGCTGCGGCTGCTGGACAAGAGCCGCCCGCTGTTCCGGCTGCCGCAGCTGGGCATG CCCGCCGAGATGGCGGGGCGCTATTCGGCGGTCCTGCAGTCGCCCTACGGGATGGTGATCTGCGCCGGGCCCACCGGCAG CGGCAAGACGACGACGCTCTACGGCTCGCTCGGCGAGCTCGACAGCAGCGAGCGCAACATCATGACCATCGAGGACCCGG TCGAGTACACCATGTCCTCGATCAACCAGATCCAGATCAACGAACAGACCGGCGTCACCTTCGCCGACGGCCTCAAGTCG ATCCTGCGCCAGGACCCGGACGTCATCCTCGTCGGCGAAGTCCGCGACGTCGACACCGCGCGCATCGCCGTGCAGTCCGC GCTCACCGGCCACTTCGTGCTCTCGTCGCTGCACGCCACCGACGCCGCTTCGGCGCTGCACCGGCTGCTGGACATGGGGA TCGAGAACTTCCTCGTGGCCTCCTCGGTCACCGCGGTGCTCGCCCAGCGGCTCGTCCGGCGGATCTGCCTGCGCTGCCGC GAGTACTACGCGCCCTCCGCCGAAGAACTGTCCTTTATGGACTCTCTTGGCGCCGAGGAGCCGGCGGGCGGGTTCGTCCG CGGGGCCGGCTGCAACTTCTGCGCGCAGACGGGATTCCTGGACCGCACCGGCGTCTACGAGCTGATGCCGGTCAGCGAAG GGATCCGCACGCTGGTGCTGGACAGCGCGCCGCACCGCGAGGTGCACGAACTGGCCCGCAAGGAAGGCATGCGGACGCTG CAGGACGAGGCGCTGCGGCTGGTCGCCGAGGGCGTCACCACCCCGGCCGAGGTGCTGCGGTCGATCTACCTCACCGGAGG GGCCCGATGA Protein sequence : MRLRTQPRTVDLRTVTPDRAAADLLGEAKARELCAIPLAVREDSVLVAVADPATAPALQAALGRPVTVAVAERADILATI GRTYRALTGVDRQVKAFEARDAVRRDAARAEAPATANDDAPVVHVVALMIKQALRDRASDIHVEPQAERIRVRYRIDGVL HDVLDLPGSMGPAVTSRIKILAGMNIVERRRPQDGQISMDVEDRPVDIRVASTPVVGGEKVVLRLLDKSRPLFRLPQLGM PAEMAGRYSAVLQSPYGMVICAGPTGSGKTTTLYGSLGELDSSERNIMTIEDPVEYTMSSINQIQINEQTGVTFADGLKS ILRQDPDVILVGEVRDVDTARIAVQSALTGHFVLSSLHATDAASALHRLLDMGIENFLVASSVTAVLAQRLVRRICLRCR EYYAPSAEELSFMDSLGAEEPAGGFVRGAGCNFCAQTGFLDRTGVYELMPVSEGIRTLVLDSAPHREVHELARKEGMRTL QDEALRLVAEGVTTPAEVLRSIYLTGGAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-78 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RAM_22665 | YP_005532470.1 | type IV pilus assembly protein PilB | VFG0182 | Protein | 2e-81 | 47 |
| RAM_22665 | YP_005532470.1 | type IV pilus assembly protein PilB | VFG2426 | Protein | 2e-64 | 44 |
| RAM_22665 | YP_005532470.1 | type IV pilus assembly protein PilB | VFG1876 | Protein | 4e-81 | 43 |
| RAM_22665 | YP_005532470.1 | type IV pilus assembly protein PilB | VFG2048 | Protein | 5e-78 | 42 |
