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Name : lysS (RAM_06140) Accession : YP_005529177.1 Strain : Amycolatopsis mediterranei S699 Genome accession: NC_017186 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 1277717 - 1281040 bp Length : 3324 bp Strand : + Note : COG2898 Uncharacterized conserved protein DNA sequence : ATGGGAAACCTCGCGAGCTCGCGCCCTCGCCTCCCCGCCTGGAAGGCGAAGGCGGGCGGCATCGCCGCGACCGTGGTCCA GCTGGCCGCGGTGTTCTCCGTGATCCTGCTCTTCACCGGCGGCCCGCACGGCCGCGTGCTCAACGGCATCGACATGGCCT TCTCCGGCTTGAGCGTGCCGACCAGCGAGAGCCTGATCATGGTGCTGCTGCTGGTGGTGCTCGGAGCCGCCCTGCGCCGC CGCAAGAAGGCCGCGCTGTACACCCTGGTGCTGTTCCAGGTCGGCGGGCTGCTGCTCACGCTGGCCCTCCAGGCGACCCT GCTCTGGTCACCCGACGTGCTGACCCTCGGCCCGAAGCAGGTCCGGCACATCCCCGCGCAGCTGTGGGTGCTGACCATCG CCGACGCCGTCTCGGTCGGGCTGATCGTGCTCCTGCTCGCGCTGCGCCCGGCGTTCCCGGCCCGCCTCGCGCCGAGCGCC TGGCGCGACGGCCTGAGCATGCTGTTCGGCGGCATCGCCGTGGTCATCCTGGTCGGGTGGGGCCTGACCGAGGCGTTCCC CGGCCACCTCGGCGACACGTGGGAGCGCTTCGCCTGGGTCGTCAACCACGCCACGGGCGAGAACCTGCAGCTGCGCCGGA TCGGCGTGGGCGAAGGGCCCGGCTGGCTGGACCTGTTCCTCGACCTCAGCGCGACGGCGGTCGCCACCGCGGCGCTGTAC CTGCTCTTCCGCGGCGTGCGCAGCCGCGCCCTGCGGACCGACGAGGACGAGCTCCGCCTGCGCCGGCTGCTCGCCGAACA CGGCGAGGACGACTCCCTCGGCTACTTCGCCACCCGGCGCGACAAGAGCGTCGTCTTCGCGCCGAACGGCCGCGCGGCGG TGACCTACCGCGTCCTCGGCGGCACGAGCGTCGCCAGCGCCGACCCGGTCGGCGACCCGGAGGCGTGGCCCGACGCGGTC CGGGCGTGGCTCGACGAGACGCGCACGTACGGCTGGACCCCGGGCGTGCTCGGGGCGAGCGAACGCGGCGCGAAGGCGTA CACCGGGGCGGGTCTGCGTGCCCTGGAAATCGGCGACGAAGCGGTGCTCGACGTCCGCGAGTTCAGCCTGGCCGGCCCGG AGCGGCGCTCGGTGCGCCAGGCCGTCAAGCGCATCGAGCGGGCCGGCTACACCTCGCGGGTCCGCCGCCACGGCGAGATC CCCGAGGCCGAGATGACCGAGCTGCTCGCCCGGGCGCAGGCCTGGCGCGGCGCCGAGACCGAACGCGGGTTCTCGATGGC GCTGGGCCGGCTCGGCGACGCCAGCGACGGCCGCAGCGTGATGGTCGAGGCCTACGACGCCCACGGCGAGCTGCGCGGGC TGCTGTCGTTCGTCCCGTGGGGGCGCCGCGGGCTTTCGCTGGACCTCATGCGCCGCGACCGCGACGCCGAGAACGGCCTC AACGAGTACATGATCGCCGAGACGGTCGCGGCCGCGCAGGTCCTCGGCGCGCAGCGGATCTCGCTCAACTTCGCGATGTT CCGCGCGGTGTTCTCCGAGGGCGAGCGGATCGGCGCCGGCCCGGTGCTGCGGGCCTGGCGTGGCATCCTCAGCGTGTTTT CGCGGTTCTTCCAGCTGGAGTCGCTGTACCGGTCCAACGCCAAGTACGGGCCGGACTGGGAGCCGCGGTTCCTCTGCTAC TCCTCGGCCCGGCGGCTGCCGCGGGTCGGCATCGTCGCGGGCGCGCTCGAAGGGTTCGTCCCGACCGGACGGGCGCGGTC GCTGCGGCTGGAGACGGTCAGCGAGGACTTCGTCGCGCGCGTCAAGGAGATCGAGGAGTCGGCGGCGGCACCGGCGCCGA AGGCCTGGCGGCGGCCCGAACAGGTCCGCGTCCGCATCGCCAAGCTCGACAAGCTGCGCGAGGCCGGCATCGACCCGTAC CCGGTCGGTTTCCGCCGCGACGACCACATCGGGGACGTCGTGGCGAAGTACGGCGACCTGGCGCCGGACACCACCACCGG GCACCGGGTCCGGATCGCCGGGCGGGTGCTGAACCTGCGCATCCTCGGCGGCCTGTGCTTCGCCCGCGTCAAGGACTTCA GCGGCGAGATCCAGCTGATGCTGGAGGCCGGCGAGCTGGACCTGACCCGCTGGCGGACCGGCGTCGACCTCGGCGACCAC GTCGGCGTCAGCGGCCAGGTCGTGACGTCGAAGCGCGGCGAGCTTTCGGTGCTCGTCGACGAGTGGACGGTCACCGCGAA GTGCCTGCACCCGCTGCCCGACAAGCGAAAGGGCCTCACCGACCCGGAGACGCGGGTCCGGCAGCGCTACCTCGACCTGG CGGTCAACCCGGACTCGACGAACATGCTGCGGCTGCGGTCCACCGTGGTCCGCGCGGTGCGCGACCGGCTGCACCACGCC GACTACCTCGAGGTCGAGACGCCGATGCTGCAGACGGTGCACGGCGGCGCCAACGCCCGGCCGTTCGTCACCCACATCAA CGCCTACGACATGCGGATGTACCTGCGGATCGCGCCCGAGCTGTACCTGAAGCGGCTGTGCGTGGCCGGCGTCGAGCGGG TCTTCGAGCTCAACCGCAACTTCCGCAACGAAGGCGTCGACGCGACGCACAACCCCGAGTTCACGATGCTCGAGGCGTAC CAGGCGTACGCGGACTACGACACGATGCGGACGCTGACCCGCGAACTGGTCCAGCACGCGGCCGAAGCGGCGTACGGGGC TCAGGTCGTCCGGCGGCCCGACGCCGACGGGAAGGTCGTCGAGTACGACATCTCCGGCGACTGGCCGGTCGTGCCGGTCC ACGAAGCCGTCTCGGCGAGGTTCGGCGAGGAGATCGACCCGGGGACGCCGGTGGCCGAGCTGCGCCGCCTGTGCGTGGCC GCCGGGGTGCCGGTGGGGGAGGACCCGAGCCACGGCGACCTCGTGCTCAAGGCGTTCGAGCACCTCGTCGAGGGCGCGAC CGTGCTGCCGACGTTCTACACCGACTACCCGACCGACGTCTCGCCGCTGACCCGCCAGCACCGGGTGGACCCGCGGCTGG CCGAACGCTGGGACCTCATCGCGTTCGGGTCGGAGGTCGGCACGGCCTACACCGAGCTGACCGACCCGATCGAGCAGCGG CGGCGGCTGGAAGGGCAGTCGCTGCGCGCGGCCAGCGGTGACGTCGAGGCGATGGAGCTGGACGAAGACTTCTTGCTCGC CTTGGAGCACGGGATGCCGCCGACCGGCGGGCTCGGCCTGGGCGTCGACCGGCTGCTCATGATGCTCACCGGTGCCTCCA TCCGCCAGACGGTCCTGTTCCCCTTCGTCCGACCGCAGGCATAA Protein sequence : MGNLASSRPRLPAWKAKAGGIAATVVQLAAVFSVILLFTGGPHGRVLNGIDMAFSGLSVPTSESLIMVLLLVVLGAALRR RKKAALYTLVLFQVGGLLLTLALQATLLWSPDVLTLGPKQVRHIPAQLWVLTIADAVSVGLIVLLLALRPAFPARLAPSA WRDGLSMLFGGIAVVILVGWGLTEAFPGHLGDTWERFAWVVNHATGENLQLRRIGVGEGPGWLDLFLDLSATAVATAALY LLFRGVRSRALRTDEDELRLRRLLAEHGEDDSLGYFATRRDKSVVFAPNGRAAVTYRVLGGTSVASADPVGDPEAWPDAV RAWLDETRTYGWTPGVLGASERGAKAYTGAGLRALEIGDEAVLDVREFSLAGPERRSVRQAVKRIERAGYTSRVRRHGEI PEAEMTELLARAQAWRGAETERGFSMALGRLGDASDGRSVMVEAYDAHGELRGLLSFVPWGRRGLSLDLMRRDRDAENGL NEYMIAETVAAAQVLGAQRISLNFAMFRAVFSEGERIGAGPVLRAWRGILSVFSRFFQLESLYRSNAKYGPDWEPRFLCY SSARRLPRVGIVAGALEGFVPTGRARSLRLETVSEDFVARVKEIEESAAAPAPKAWRRPEQVRVRIAKLDKLREAGIDPY PVGFRRDDHIGDVVAKYGDLAPDTTTGHRVRIAGRVLNLRILGGLCFARVKDFSGEIQLMLEAGELDLTRWRTGVDLGDH VGVSGQVVTSKRGELSVLVDEWTVTAKCLHPLPDKRKGLTDPETRVRQRYLDLAVNPDSTNMLRLRSTVVRAVRDRLHHA DYLEVETPMLQTVHGGANARPFVTHINAYDMRMYLRIAPELYLKRLCVAGVERVFELNRNFRNEGVDATHNPEFTMLEAY QAYADYDTMRTLTRELVQHAAEAAYGAQVVRRPDADGKVVEYDISGDWPVVPVHEAVSARFGEEIDPGTPVAELRRLCVA AGVPVGEDPSHGDLVLKAFEHLVEGATVLPTFYTDYPTDVSPLTRQHRVDPRLAERWDLIAFGSEVGTAYTELTDPIEQR RRLEGQSLRAASGDVEAMELDEDFLLALEHGMPPTGGLGLGVDRLLMMLTGASIRQTVLFPFVRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-163 | 47 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-163 | 47 |
