Gene Information

Name : A1122_03870 (A1122_03870)
Accession : YP_005520469.1
Strain : Yersinia pestis A1122
Genome accession: NC_017168
Putative virulence/resistance : Virulence
Product : two component system sensor kinase SsrB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 849432 - 850064 bp
Length : 633 bp
Strand : +
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence : 
ATGAATACTAAATTATTGATTGTCGACGATCATGAACTCATTATTCATGGCATCAAGAATATGCTGGCCGCCTATCCGCG
CTACCTGATTGTAGGCCAAGCGGATAATGGACTTGAAGTGTATAACTTGTGCCGCCAAACTGAACCTGACATGGTCATTC
TGGATTTAGGATTACCCGGTATGGATGGCCTTGATGTTATCATTCAGTTGCTTCGCCGTTGGCCAGCCCTGAAGATCCTG
ACGTTAACCGCCCGCAATGAAGAACACTATGCCAGCAGAACATTCAACAGTGGAGCCTTAGGTTATGTGCTGAAGAAAAG
TCCCCAGCAAATCCTGATGGCAGCCATTCAAACCGTCGCAATAGGTAAACGTTATATTGACCCCGCCCTTGATGCCTCTA
TGGTAATAAAACTGACCCAAGGATCCGATAATACGCCCCCGGTTCTGACACCTCGCGAGCGGCAGATATTAAAACTTATC
ACCGAGGGATCGTGTAATCGAGTTATTGCTGCTCAACTTTCTATCAGCCAAAAAACCGTCGAAACACATCGGCTGAATAT
GATGAAAAAATTGGATGTACATAAAGTCGCAGAACTTATTCACTGGTCATACCGATTAGGCTTGAATGTCTAA

Protein sequence : 
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLDVIIQLLRRWPALKIL
TLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGSDNTPPVLTPRERQILKLI
TEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 7e-89 100
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 6e-41 56
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 5e-41 56
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 5e-41 56
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 5e-41 56
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 1e-35 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A1122_03870 YP_005520469.1 two component system sensor kinase SsrB VFG0492 Protein 2e-41 56
A1122_03870 YP_005520469.1 two component system sensor kinase SsrB VFG2440 Protein 1e-25 41