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Name : A1122_20415 (A1122_20415) Accession : YP_005523714.1 Strain : Yersinia pestis A1122 Genome accession: NC_017168 Putative virulence/resistance : Virulence Product : outer membrane usher protein PsaC Function : - COG functional category : - COG ID : - EC number : - Position : 4386352 - 4388823 bp Length : 2472 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGAGCACTTCATTTTTAGTGGGTGCCCAGCGTTATTCTTTTGATCCCAATCTGCTAGTGGATGGCAATAACAACACTGA TACCTCGTTATTTGAACAGGGCAATGAATTACCGGGCACCTATTTGGTGGATATTATCTTGAATGGGAATAAAGTGGACT CTACGAATGTGACATTTCATTCGGAGAAATCGCCATCAGGAGAGCCTTTCTTGCAATCTTGCTTAACCAAGGAGCAGCTA TCCCGCTATGGTGTGGATGTTGATGCCTATCCCGAGTTATCTCCAGCATTAAAAAACTCACAGACAAACCCGTGTGTCAA TTTAGCCGCTATCCCTCAGGCCAGTGAAGAGTTCCAATTTTATAATATGCAGTTGGTACTGAGTATTCCACAAGCGGCTT TACGGCCTGAAGGTGAAGTGCCAATAGAACGCTGGGATGATGGTATTACGGCTTTTTTGCTGAACTACATGGCAAATATC AGTGAAACCCAGTTTCGTCAAAATGGTGGATACCGGCGTTCACAATATATCCAGTTATATCCCGGTTTAAATTTGGGGGC GTGGCGTGTTCGTAATGCGACCAACTGGAGTCAATCTGGCGATAGGGGGGGTAAATGGCAAAGTGCTTATACCTATGCCA CTCGTGGGATTTATCGTTTAAAGAGCCGGGTGACCTTAGGGGAGAGTTACACCCCAGGTGATTTTTTCGACAGCATTCCC TTTCGTGGCGTGATGTTGGGGGACGATCCTAATATGCAGCCAAGTAACCAGCGGGATTTTATACCGGTGGTGCGTGGTAT TGCCCGTAGTCAGGCGCAGGTGGAAATCAGACAAAATGGTTATCTGATTTATAGTACGGTGGTGCCGCCGGGGCCGTTTG AACTCTCTGACGTGATCCCGAGTAAATCAGGCAGTGACCTACATGTTAGGGTGCTGGAAAGTAACGGGGCATCGCAGGCG TTTATTGTGCCTTATGAGGTGCCAGCCATTGCATTGCGCAAAGGGCATTTGCGATACAATCTGGTGGCAGGGCAGTATCG CCCCGCCAATGCTGATGTTGAGACGCCTCCGGTCGCTCAGGCAACCGTCGCCTACGGCTTGCCGTGGAACTTGACCGCAT TTATCGGTGAGCAGTGGTCGCGGCATTATCAGGCAACCTCTGCCGGATTAGGGGGGCTATTGGGGGAGTATGGCGCATTG TCATCCAGTATCACGCAGGCAACCAGTCAGTATCACCATCAACAACCGGTTAAAGGGCAAGCCTGGGAGGTTCGATACAA CAAAACCTTACAAGCCTCTGATACGTCATTTTCATTGGTGAATAGTCAATACAGCACTAATGGTTTCAGTACGTTATCTG ATGTATTACAAAGTTACCGGCAGAGCGGGAGTGGCGATAATAGAGATAAAATTGACGAAAATTCTCGGTCAAGGGATTTG CGTAACCAAATCAGTGCGGTCATCGGGCAGTCATTGGGCAAGTTTGGCTACCTGAACCTTAATTGGTCGCGGCAGGTCTA CCGTGGGCCGATTCCGGCTAAGAATTCATTGGGAATACACTATAACCTCAATGTCGGTAATAGTTTTTGGGCACTGAGTT GGGTGCAAAATGCGAATGAGAACAAGAATGATCGAATATTGAGTTTGTCTGTCAGTATTCCGCTGGGAGGTCATCACGAT ACTTATGCTTCCTATAGAATGACATCTTCCAACGGGAGCAATGATCATGAGATAGGAATGTACGGCCAGGCTTTTGACTC TCGCTTGAGTTGGAGTGTGCGTCAGGCAGAGCATTATGGTCAACCCAACTCAGGGCATAACAGCGGCTCACTCAGGTTGG GCTGGCAGGGTTCCTATGGCAATATCGCGGGAAATTACTACTATACTCCGAGCATACGTCAGTTATCCGCTGATGTTTCC GGAGGGGCGATCATCCATCGGCATGGGCTGACATTAGGGCCGCAAATCAATGGCACCTCCGTGCTGGTTGAAGTTCCGGG CGTCGGCGGGGTGACCACCACAGAAGATCGCCGTCTGAAAACAGATTTTCGCGGTTACAGCATTGTGTCTGGCCTCTCTC CTTATCAGGAGCACGATATCGTGTTGGAAACTGCAGATTTACCGCCGGATGCGGAGGTGGCAAAAACAGATACCAAGGTC TTGCCGACCGAGGGGGCGATTGTTCGTGCCAGTTTTAGCCCGCAAATCGGGGCAAAGGCGCTGATGACGATCACCCGCGC TAATGGCCAAACCATTCCGTTTGGTGCGATGGCGAGCTTGGTTAATCAGTCGGCCAATGCAGCCATTGTCGATGAAGGGG GGAAAGCCTATCTAACCGGGTTACCGGAAACAGGGCAGTTATTGGTGCAATGGGGTAAAGATGCGGGCCAACAATGCCGG GTGGATTACCAGCTCTCGCCAGCGGAAAAAGGTGATACCGGGCTGTATATGCTCAGCGGAGTATGCCATTAA Protein sequence : MSTSFLVGAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQL SRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLSIPQAALRPEGEVPIERWDDGITAFLLNYMANI SETQFRQNGGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIP FRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQA FIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATSAGLGGLLGEYGAL SSSITQATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSGDNRDKIDENSRSRDL RNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQNANENKNDRILSLSVSIPLGGHHD TYASYRMTSSNGSNDHEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVS GGAIIHRHGLTLGPQINGTSVLVEVPGVGGVTTTEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAKTDTKV LPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCR VDYQLSPAEKGDTGLYMLSGVCH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 6e-176 | 47 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 5e-160 | 44 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 5e-162 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| A1122_20415 | YP_005523714.1 | outer membrane usher protein PsaC | VFG0853 | Protein | 5e-160 | 44 |
| A1122_20415 | YP_005523714.1 | outer membrane usher protein PsaC | VFG0944 | Protein | 3e-157 | 43 |
| A1122_20415 | YP_005523714.1 | outer membrane usher protein PsaC | VFG0849 | Protein | 6e-148 | 41 |
| A1122_20415 | YP_005523714.1 | outer membrane usher protein PsaC | VFG0857 | Protein | 9e-143 | 41 |
