Gene Information

Name : lolD (TC41_0385)
Accession : YP_005516870.1
Strain : Alicyclobacillus acidocaldarius Tc-4-1
Genome accession: NC_017167
Putative virulence/resistance : Resistance
Product : abc transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 379663 - 380352 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
GTGCACATGCAAAACATTGTGAAGGAATACTTCATCGGAGATCAAGTTATTCGGGCACTCAATGACGTCACGCTGGACAT
CTGGCCAGGCGAGTTTGTCGCCATCATGGGGCCGTCGGGATCGGGCAAATCGACGATGATGAACGTCATGGGCTGTCTGG
ACGTTCCCACGAGTGGCACGTACGTTCTGGACGGCGTTGAGGTGTCGACGCTGTCGGAGGATGAACTTGCCGCGGTGAGG
AATCAGAAGATCGGTTTCATCTTTCAAAATTTTAATCTTCTGCCTCGCACGACCGCTCTCGAAAACGTCGAACTTCCGAT
GTTGTACATGGGGATCCCGCCTCGAGAACGGCGGGAGCGAGCGATGGCGGCGTTGGAGCAGGTCGGCCTGAAGGAGCGCG
CATACAATCGCCCGAATGAACTTTCAGGAGGACAGCAGCAACGCGTCGCCATTGCTCGGGCGCTCGTCAATCAGCCGAAC
ATCATTCTTGGAGACGAGCCAACGGGGGCCTTGGACAGTAAAACGACCGAGGACATCCTTGCGCTTCTTCACGAGTTGCA
CGGACAGGGCAACACCATCATTTTGGTCACGCACGACGCCGAGGTCGGCCGCCACGCGGAACGGGTGATCCGATTTCGTG
ACGGTCGCGTTGAGTCAGATACCGCTGCGGCCTACGAGGGGGAGCGCTGA

Protein sequence : 
MHMQNIVKEYFIGDQVIRALNDVTLDIWPGEFVAIMGPSGSGKSTMMNVMGCLDVPTSGTYVLDGVEVSTLSEDELAAVR
NQKIGFIFQNFNLLPRTTALENVELPMLYMGIPPRERRERAMAALEQVGLKERAYNRPNELSGGQQQRVAIARALVNQPN
IILGDEPTGALDSKTTEDILALLHELHGQGNTIILVTHDAEVGRHAERVIRFRDGRVESDTAAAYEGER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005516870.1 abc transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-56 56
lolD YP_005516870.1 abc transporter ATP-binding protein NC_008702.1.4606598. Protein 7e-45 51
lolD YP_005516870.1 abc transporter ATP-binding protein CP001581.1.gene598.p Protein 4e-38 43
lolD YP_005516870.1 abc transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-36 42
lolD YP_005516870.1 abc transporter ATP-binding protein NC_012469.1.7685735. Protein 1e-30 41