Gene Information

Name : lolD (TC41_2342)
Accession : YP_005518762.1
Strain : Alicyclobacillus acidocaldarius Tc-4-1
Genome accession: NC_017167
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2234106 - 2234792 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGATTCGCCTCGTGGGCGTGACAAAGTCGTACACTGTCGGCGAGCAGGTCATTCCCGTGCTGAAGGGCATCGACCTCGA
GGTTCAGCGGGGCGAGTTCGTCGCGGTCATGGGTCCCTCGGGCAGTGGCAAATCCACGCTCATGCACATCCTCGGGCTCT
TGGACCGGCCGAGCTCGGGCGACTATGAGCTGAACGGTGCGTCGGTGCTTGGCCTGCCTTCGAACGATCTCGCCCGCCTG
CGCAATCAGAACATCGGGTTTGTGTTTCAGAATTTTCACCTCATCCCGCGCATGTCTGCGGTGCGCAACGTGGAGCTTCC
GATGGTCTACGCAGGCGTTCCTCGCGCCGAGCGGCGAGCGCGCGCCATGGAACTGCTCGAGATGGTGGGTATGGCCAATC
GAGCCCATCATCTGCCCAATGAGCTGTCGGGAGGTCAGCGGCAGCGCGTCGCCATTGCCCGCGCGCTCGCCAACGACCCG
GCCGTCCTGCTCGCCGATGAACCCACCGGCGCGCTCGACCAGCAGACGGGCGCTGAGATCCTCCGCATTCTCCGGGATTT
GCACGCGGCCGGGCGGACCGTCATGGTCATCACGCACGATCCCCACGTTGCGCGCGCCGGCCAGCGCATCCTGCACATGG
TCGATGGCGAGATCGTCCGAGAGGAGGTACCGGATGAGCCTCGATGA

Protein sequence : 
MIRLVGVTKSYTVGEQVIPVLKGIDLEVQRGEFVAVMGPSGSGKSTLMHILGLLDRPSSGDYELNGASVLGLPSNDLARL
RNQNIGFVFQNFHLIPRMSAVRNVELPMVYAGVPRAERRARAMELLEMVGMANRAHHLPNELSGGQRQRVAIARALANDP
AVLLADEPTGALDQQTGAEILRILRDLHAAGRTVMVITHDPHVARAGQRILHMVDGEIVREEVPDEPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-35 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-35 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005518762.1 ABC transporter NC_012469.1.7686878. Protein 3e-57 54
lolD YP_005518762.1 ABC transporter NC_008702.1.4606598. Protein 1e-46 51
lolD YP_005518762.1 ABC transporter CP001581.1.gene798.p Protein 4e-38 42