Gene Information

Name : TC41_2079 (TC41_2079)
Accession : YP_005518509.1
Strain : Alicyclobacillus acidocaldarius Tc-4-1
Genome accession: NC_017167
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1982256 - 1982930 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTATTCTTCTCGTCGAAGACGACAGGGGGCTAAGTCAGGCCCTTGCAGAACTCCTGCGAGAGGAGTCGTTTCAAGT
TGATGTGGCGTATGACGGCGAGGAGGGCCTCTACCTCGCCGAGACGGCGGTGTACGACGCGCTCGTTGTCGACGTCATGC
TGCCTGGCCTGTCGGGTTACGATCTCGTCCGCACCTTGAGGGACAAGCGCGTGCACGTGCCTGTTCTGTTTCTCACCGCC
CTGGGCGACGTTGATCACCGCGTTCAAGGGCTGAACGCCGGCGGGGACGACTACCTGCCGAAGCCGTTTGCCACTGAGGA
GTTTCTTGCCCGGCTGCGCGCCTTGTTGCGCCGCAACCGGGAATTAGGGACCGACCTGACGCTTCGGTCAGGTTCCCTGG
TTTTGGATCCCCTCGCCCGGCGTGCGGCATTTGGGGACGAGCCCCTCAAGCTCAGCGACAAGGAGTTCGATCTCCTCGAA
TACCTGCTCAGCCATCGCGGACAAATTCTCACGCGCGAGCGGATCTTCAACCGCGTGTGGGGCATCCATTCGGACGTGAT
GGACACGACCGTGGATCTGTATGTCCATTATCTGCGCAAGAAACTTCAGCCGTTCGGCTACGATACAGCGATTCGCACGG
TGCGCAACGTCGGATACATGTGGAGTGACGCGTGA

Protein sequence : 
MRILLVEDDRGLSQALAELLREESFQVDVAYDGEEGLYLAETAVYDALVVDVMLPGLSGYDLVRTLRDKRVHVPVLFLTA
LGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNRELGTDLTLRSGSLVLDPLARRAAFGDEPLKLSDKEFDLLE
YLLSHRGQILTRERIFNRVWGIHSDVMDTTVDLYVHYLRKKLQPFGYDTAIRTVRNVGYMWSDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-25 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-29 44
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-34 43
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-32 42
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-24 42
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TC41_2079 YP_005518509.1 winged helix family two component transcriptional regulator VFG0596 Protein 8e-26 42