Gene Information

Name : Hydth_1287 (Hydth_1287)
Accession : YP_005511968.1
Strain : Hydrogenobacter thermophilus TK-6
Genome accession: NC_017161
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1180529 - 1181842 bp
Length : 1314 bp
Strand : -
Note : COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR016040:IPR014027:IPR008927:IPR001732:IPR 014026:IPR017476; KEGG: tye:THEYE_A0424 VI polysaccharide biosynthesis protein VipA/TviB; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-g

DNA sequence :
GTGATTGACTTTAAAAGTCTGTTGGAAGGCAAGGAGAAAATCTGCGTAGTTGGACTTGGTTATGTGGGCCTTCCTTTGGC
TTTAGCTTTTTCCAAGCACTTCAAAGTGGTTGGTTACGATAAAAAGGTATCAAGAATAGACGAGCTTCTCTCCGGAGTGG
ATACCACAGGTGAGATAAAAAAAGAAGACCTTCTTAAGCACAGTGTAGAGTTTACCAGCGACGAAAGACGCATATCGGAA
GCGAGGTTTATAGTGGTGGCAGTTCCCACACCTGTTGACAAGCTAAAAAATCCAGACCTTTCTTTCCTGAAAGAAGCCTC
TAAAACTGTAGGAAGGCATTTAAGTAAAGGTAGCGTCGTAGTGTATGAGTCCACCGTTTATCCGGGAGCTACCGAGGAAG
TCTGCGTGCCTATACTTGAGAAGGAGAGCGGATTAAAGTGGAAGAGGGACTTCTTTGTAGGGTACTCACCAGAGAGAGTA
AATCCTGGTGATAAGGAGCATACCATAGAAAAAATTGTCAAGGTGGTGGCTGGAGATACAGAGAGCACCCTTGAGCTGAT
AGCATCGGTTTATGGCAAAGTCATAGAGGTGGGTGTTTACAGAGCACCTGATATAAGGACTGCAGAGGCTGCAAAGGTCA
TAGAGAACATACAGAGAGACATAAACATAGCTCTCATGAACGAGCTTTCTGTAATATTTCACAAGTTGGGGATTGATACA
AAGGAAGTTTTAAAAGCTGCAAGCACCAAATGGAACTTTTTGAGGTTTGAGCCAGGACTTGTAGGTGGACACTGTATACC
TGTAGACCCCTACTATCTTGCCCATAAATCCTTAGAGGCTGGACATGTGCCAGAGCTAATTCTGGCGGGAAGAAGGATAA
ATGAGAACATGCCTTACTATGTAGCTTATCAGACAGTAAAACTGCTCATAAAGAGCGGTAAAAGGGTAAATTCTGCAAAA
GTTTTGCTGATGGGCATAACCTTTAAAGAGAATGTACCTGATATCAGAAACAGCAAGGTTTATGAACTTTATAAGGAGCT
AAAAGAGTTCGGCATGGAGGTTTATGTATACGACCCTGTGGCTAACCAGAAGGAGGTAAAGGAAGAGTACGGTATAGACC
TTCTTAAGGACTTAAAAGCGCACGCACCTTATGACTGTATCCTTTTAGCTGTCAAACACAGCATATTTTTAGAGAGTTTT
GACCTTTCCTTTTACAAGGCAATAATGACTGAGCCATACATCCTTGTGGACATAAAAGGCATTTACGAAAAAGATGCAGC
CATTAAAGAGGGTTTTGTTTACTGGAGGCTATAA

Protein sequence :
MIDFKSLLEGKEKICVVGLGYVGLPLALAFSKHFKVVGYDKKVSRIDELLSGVDTTGEIKKEDLLKHSVEFTSDERRISE
ARFIVVAVPTPVDKLKNPDLSFLKEASKTVGRHLSKGSVVVYESTVYPGATEEVCVPILEKESGLKWKRDFFVGYSPERV
NPGDKEHTIEKIVKVVAGDTESTLELIASVYGKVIEVGVYRAPDIRTAEAAKVIENIQRDINIALMNELSVIFHKLGIDT
KEVLKAASTKWNFLRFEPGLVGGHCIPVDPYYLAHKSLEAGHVPELILAGRRINENMPYYVAYQTVKLLIKSGKRVNSAK
VLLMGITFKENVPDIRNSKVYELYKELKEFGMEVYVYDPVANQKEVKEEYGIDLLKDLKAHAPYDCILLAVKHSIFLESF
DLSFYKAIMTEPYILVDIKGIYEKDAAIKEGFVYWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-101 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-93 54
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-93 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hydth_1287 YP_005511968.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-93 54