Gene Information

Name : lysS (YPD8_0787)
Accession : YP_005507870.1
Strain : Yersinia pestis D182038
Genome accession: NC_017160
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1024756 - 1026273 bp
Length : 1518 bp
Strand : +
Note : -

DNA sequence :
ATGTCAGAGCAAAAACCACAAGTCGCTGAGCAAGCGCAAGAACTCAATAGTGAGTTACAAGCCCGTCGAGAAAAACTGGC
TGTCTTACGGGGAAAGGGAATTGCATTCCCTAATGATTTCCGCCGTGAGAACCTTTCCGACCAGTTGCATGCCGAGTTTG
ACAGTAAAGAGAATGAAGAGTTAGAAGCACTGAATATCGACGTAACCGTTGCTGGCCGTATGATGACCCGCCGTATCATG
GGTAAAGCATCATTTGTGACTCTGCAAGATGTTGGTGGCCGTATCCAGTTGTACGTTTCCCGTGATGACCTACCGGAAGG
CGTTTATAACGAAGAATTCAAAAAGTGGGACCTGGGCGATATCCTGGGTGCGCGCGGTAAACTGTTTAAAACCAAAACCG
GTGAGCTGTCGATCCACTGTAGCGAACTGCGTCTGTTGACCAAGGCTCTGCGTCCATTGCCAGATAAATTCCATGGCTTA
GCTGACCAGGAAACCCGTTACCGCCAGCGTTATTTGGATCTGATTGCTAACGACGAGTCTCGTCATACTTTCAAAGTCCG
TTCGCAAGTGATGTCCGGTATCCGTAGCTTCATGGTTGAAAAAGGCTTCATGGAAGTCGAAACGCCAATGATGCAAGTGA
TCCCTGGCGGCGCTTCCGCACGTCCGTTTGTCACGCATCACAATGCGTTGGATATCGATATGTATTTGCGTATCGCGCCA
GAGCTGTATCTGAAACGTCTGGTCGTGGGGGGCTTCGAACGTGTGTTCGAAATCAACCGTAACTTCCGCAACGAAGGGGT
TTCGCCACGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCTTATGCGGACTATAAAGACCTGATCGTCTTGA
CGGAAGAGCTATTCCGCACTCTGACCGAAACCATATTGGGGAGCAGTGTGGTGCAATATGGCGAACAGACTTTTGATTTC
GGTAAGCCTTTTGCCAAATTGACCATGAAAGAAGCTATTTGTAAATATCGTCCTGAAACCAATGTCGCGGATTTAGACGA
TATGGATAAAGCCGTCGCAATTGCCGAATCATTGGGTATCAAGGTTGAGAAGAGCTGGGGCCTGGGTCGTATTCAATGTG
AAATCTTTGAAGAGACCGCAGAAAGTCATCTTATCCAGCCAACGTTCATCACAGAATATCCAGCCGAGGTTTCTCCGCTA
GCACGCCGTAATGACGATAATCCATTTATCACTGACCGCTTTGAATTCTTCATCGGTGGCCGTGAAATTGGTAATGGCTT
CTCTGAGTTGAACGATGCCGAAGACCAGGCGCAGCGTTTCGCCGATCAGGTAAGTGCTAAAGAAGCTGGCGATGATGAAG
CGATGTTCTACGATGAAGACTATATCACTGCATTGGAACATGGCTTACCACCAACCGCAGGGCTAGGTATTGGTATTGAC
CGTATGGTTATGTTGTTTACCAATAGCCATACCATCCGTGATGTCATTTTATTCCCAGCGATGCGCCCGGTAAAATAA

Protein sequence :
MSEQKPQVAEQAQELNSELQARREKLAVLRGKGIAFPNDFRRENLSDQLHAEFDSKENEELEALNIDVTVAGRMMTRRIM
GKASFVTLQDVGGRIQLYVSRDDLPEGVYNEEFKKWDLGDILGARGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGL
ADQETRYRQRYLDLIANDESRHTFKVRSQVMSGIRSFMVEKGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP
ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIVLTEELFRTLTETILGSSVVQYGEQTFDF
GKPFAKLTMKEAICKYRPETNVADLDDMDKAVAIAESLGIKVEKSWGLGRIQCEIFEETAESHLIQPTFITEYPAEVSPL
ARRNDDNPFITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQVSAKEAGDDEAMFYDEDYITALEHGLPPTAGLGIGID
RMVMLFTNSHTIRDVILFPAMRPVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 1e-164 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_005507870.1 lysyl-tRNA synthetase VFG1668 Protein 6e-165 67