Gene Information

Name : YPD8_3564 (YPD8_3564)
Accession : YP_005510625.1
Strain : Yersinia pestis D182038
Genome accession: NC_017160
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4532631 - 4534460 bp
Length : 1830 bp
Strand : -
Note : -

DNA sequence : 
ATGCCATATAATTCTAAAAGAAAAAAAACCATCTTCCTAATGGTGAAAGTATTAACAATAATTTTAGTATGGTTATTTTT
GCCTGAATCGACTGCAGTAGTAAAATTCAATACCAATATTATCGATGCTAAAGACCGTAGTAATATCGATCTCTCTCGTT
TTGAGGTTGATGATTACACCCCTCCGGGGAATTATCTACTTGATATTCTTATTGATGATAGGCTGTTACCTGAACGTTAT
TTAGTGACTTATCTCGCTGTTGATGAAGGGAAATCAACGAAGCTCTGTTTGACGCCTGACTTAGTTAATCTATTTGGTTT
ATCTACGGAAGTACGTGAGTCGATGACATTATGGAATAACGACAAGTGTGTTGCTATTGATGAAAAAAAAGAGATAAAAA
TTCAGTACGATAAAGAGAAGCAATCCTTAATTATTTCTATTCCCCAAGCTTGGCTGGCTTATAACGATCCCAATTGGGTG
CCGCCTTCACAATGGGGAAACGGTGTTGCTGGTACTTTATTGGATTACAATTTGTTTGGTTATCATTATTCACCGAATAT
GGGCGGCAGTACCACAAATTTCAGCAGCTACGGCACTACCGGGGCTAATATGGGACCATGGCGTATTCGTGCAGATTACC
AATATATCAATACAGAAACGGCGGGCGAGCACTACCGTAATTTTGATTGGTCGCAAGTGTATGCTTTTCGAGCCATCCCC
TCGATAGGGGCTAAATTTGTCGGTGGCCAGACTTATCTCAACTCCAGTATTTTTGATTCATTCCGTTTTCTGGGCACTTC
ACTTTCCAGTGATGAGCGCATGTTGCCACCGACGTTACGCGGCTATGCACCACAGGTAATGGGCATTGCTCACACCAACG
CCCGCGTGGTATTGAGCCAGAATGGGCGGGTGCTTTATCAGACTAACGTTGCACCAGGCCCCTTTGTTATTCAAGACATT
AGCGAAGCCGTACAAGGGAATATTGATGTCCGCGTGGAAGAGGAAGATGGCCGGGTCACCGTGTTTCAAGTCAACGCCGC
GAGCGTGCCATTTTTAACCCGTAAAGGTGCCGTGCGCTATAAAGCTGCGTTGGGTCGCCCGATGCTGGGTAATTCAGCCA
GTAATCCGACATTCTTTAGTGGCGAATTCTCGTGGGGCGCATTTAACCATGTTTCATTATACGGTGGGCTGATGACGACT
TCGCAGGATTACACCTCGGCTGCGTTGGGCATCGGGCAAAATTTATATGACTTCGGCGCACTGTCTATTGATATCACCCA
TTCCCGTGCGCAGTTACCAAATGAAGAACAGCAGAACGGGGAAAGCTATCGCGTTAATTATTCCAAACGTTTTGAGCAGA
CTGACAGCCAGATTAGCTTTGCCGGATACCGTTTCTCGAAGAAGAATTTTATGAGTATGAGCCAGTATTTGGATTGGCTA
AACGGCAATACTGCTCTGCAATATGACAAGCAGGCTTATACCGTGGCAGCTAACCAGTATCTGGCCTGGCCGGATATCAC
GATGTATTTATCGGTGACACGTAGAACCTATTGGAATGCGGCCTCCAGTAACAACTACAGTCTATCCATGAGCAAGATTT
TTGATATCGGTACTTTTAAGGGTATTTCGGCGACGATATCCGCTAATAAGGTGAATAATCAGTATGCCAATGAGAATCAA
ATGTTCTTCTCACTCAGCGTACCGATCGGCATAGGCCAGCAGGCCAGCTATGATGCACAGCGAGGCCGCAATACCGGCTA
CACGCAAAATATCTCCTTTCAACAACCAGAATCCGAAAAATATTTGGCGTATCAGCGCGGGTGGCGGTAA

Protein sequence : 
MPYNSKRKKTIFLMVKVLTIILVWLFLPESTAVVKFNTNIIDAKDRSNIDLSRFEVDDYTPPGNYLLDILIDDRLLPERY
LVTYLAVDEGKSTKLCLTPDLVNLFGLSTEVRESMTLWNNDKCVAIDEKKEIKIQYDKEKQSLIISIPQAWLAYNDPNWV
PPSQWGNGVAGTLLDYNLFGYHYSPNMGGSTTNFSSYGTTGANMGPWRIRADYQYINTETAGEHYRNFDWSQVYAFRAIP
SIGAKFVGGQTYLNSSIFDSFRFLGTSLSSDERMLPPTLRGYAPQVMGIAHTNARVVLSQNGRVLYQTNVAPGPFVIQDI
SEAVQGNIDVRVEEEDGRVTVFQVNAASVPFLTRKGAVRYKAALGRPMLGNSASNPTFFSGEFSWGAFNHVSLYGGLMTT
SQDYTSAALGIGQNLYDFGALSIDITHSRAQLPNEEQQNGESYRVNYSKRFEQTDSQISFAGYRFSKKNFMSMSQYLDWL
NGNTALQYDKQAYTVAANQYLAWPDITMYLSVTRRTYWNAASSNNYSLSMSKIFDIGTFKGISATISANKVNNQYANENQ
MFFSLSVPIGIGQQASYDAQRGRNTGYTQNISFQQPESEKYLAYQRGWR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papCb AAL67415.1 truncated PapC Virulence PAI II CFT073 Protein 1e-97 42
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 5e-101 41
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 6e-100 41
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 9e-100 41
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 6e-101 41
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 8e-101 41
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 9e-103 41
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 7e-101 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD8_3564 YP_005510625.1 hypothetical protein VFG1548 Protein 3e-101 41
YPD8_3564 YP_005510625.1 hypothetical protein VFG0895 Protein 3e-101 41
YPD8_3564 YP_005510625.1 hypothetical protein VFG0884 Protein 3e-101 41