Gene Information

Name : YPD8_3553 (YPD8_3553)
Accession : YP_005510614.1
Strain : Yersinia pestis D182038
Genome accession: NC_017160
Putative virulence/resistance : Unknown
Product : putative phage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4519840 - 4521033 bp
Length : 1194 bp
Strand : -
Note : -

DNA sequence :
ATGCCACTATCAGATAGACAGATTCGCCGTGCTAAACCACAAGAAAAAGCCTATACCCTGAGTGACGGGCAAGGGCTATC
ACTCTTAATTGAACCTAACGGCAGTAAAGGGTGGCGCTTTCGCTATCGTTTTGCCGGTAAAGCCCGATTAATGTCATTAG
GGACTTATGATCTTGTTTCTCTTGCTGAAGCTCGCTCTAAGCGAGATGTGGCACGTAAACAGGTTGCAGATGGAACAGAT
CCCGCAGAGGTGAAAAAGGCTGAGAAGTTGGCGCAGCGGCTTTCATCGGAAAACTCTTTTGAGGCCATTAGCCGTGAGTG
GCATAAAGCCAAAGCCGATCGCTGGTCATTGGGCTATAGGGAAGAAATCATGAGTACCTTTGAGGCGGATATATTCCCGT
ATATTGGTAAACGGCCAATTGCAGAAATCACTCCGCTGGAGTTACTTGATGTGCTTCAACGTATCGAAAAGCGTGGAGCG
TTAGAAAAAACGCGCAAAGTACGCCAGCGCTGTGGTGAAGTATTTCGTTATGCCATTATTACCGGCCGTGCTGAATATAA
TCCCGCCCCTGACCTTGCCAGCGCATTAAGTACACCAAAGAAACAGCACTACCCGTTCCTGTCTGCCGAAGAGATGCCAT
ATTTTATTCGTGATCTAGAGGGTTACACCGGCAGCATCATAACCAAGAACGCGGCAAAGATACTTATGCTAACGGGTGTG
CGAACTAAGGAAATGCGTTTTGCTACTTGGCAGGAAATCGATCTTGAGGGCGGCTTGTGGGAGATTCCAGCAGAACGAAT
GAAGATGCGCCGCCCCCATATCGTGCCGCTGTCTACACAAGTTATAGCGCTATTTAAACAGCTCTTACCTATCACCGGGC
ATTACCCTTATATTTTCATTGGACTGAATGACCGTAAAAAGCCCATAAGTAAAGAAACAGTCAATCAGGTCATTGAATTA
CTGGGTTATAAAGGCCGTGCGACGGGTCACGGATTTAGACATACCATGTCAACGATATTGCATGAGCAGGGCTATGATAG
TGCATGGATTGAGCTACAATTGGCTCACGTTGATAAGAACAGTATTCGTGGTACTTACAATCATGCGCAGTATCTTGAAA
AGCGAAGAGAGATGTTGCAGTGGTATGCTGATCTCATTTTTAATTTTTTCAGGAAAAATTATGAGCGCATCTAA

Protein sequence :
MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVSLAEARSKRDVARKQVADGTD
PAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYREEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGA
LEKTRKVRQRCGEVFRYAIITGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV
RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFIGLNDRKKPISKETVNQVIEL
LGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKNSIRGTYNHAQYLEKRREMLQWYADLIFNFFRKNYERI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-141 72
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-141 72
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-141 72
int ACU09430.1 integrase Not tested LEE Protein 5e-141 72
int CAC39282.1 integrase Not tested LPA Protein 1e-141 72
aec33 AAW51716.1 Int Not tested AGI-3 Protein 6e-142 72
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-139 72
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-139 72
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-139 72
int AAD44730.1 Int Not tested SHI-2 Protein 1e-139 71
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-113 60
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-115 57
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 7e-59 42
intA AAB00935.1 integrase A Not tested vap locus Protein 4e-59 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-72 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-73 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-73 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-73 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-74 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-74 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 7e-74 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-73 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-73 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-73 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-73 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-73 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-73 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-73 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-73 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-72 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-73 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-73 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 7e-74 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-73 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD8_3553 YP_005510614.1 putative phage integrase VFG0783 Protein 3e-141 72
YPD8_3553 YP_005510614.1 putative phage integrase VFG0598 Protein 9e-140 72
YPD8_3553 YP_005510614.1 putative phage integrase VFG0626 Protein 2e-74 41
YPD8_3553 YP_005510614.1 putative phage integrase VFG1693 Protein 7e-74 41