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Name : hofB (YPD8_3010) Accession : YP_005510075.1 Strain : Yersinia pestis D182038 Genome accession: NC_017160 Putative virulence/resistance : Virulence Product : putative type II secretion system protein Function : - COG functional category : - COG ID : - EC number : - Position : 3806821 - 3808359 bp Length : 1539 bp Strand : + Note : - DNA sequence : ATGGCTGAATTTATAGTGTCCTCATTTGAAACAATTAGTGATGAATTACACCTTCTCTGTCGGCGTTATCGGGCAGTGGC ACTCACTCTTGATGGTAAAAGCCTTTCGATAGCTTCAGCCCAGACCGTTGATGAAGCGTTATTGACCGCGTTGCGTTTCA CATGTGGCCGTCAAGTCAGAGTGGAATATTGGCCCGAAGCCAAGATTGAACAATCATTGTATTTGGGGAGCCCGACGAAA AATAACCTAAACAGTAGTATTAACAACGGGCTAAATAGCGCGTTGTTATCCCAAAAGGGAGGTGATCCGTCGCGAGTAAA ACCGCACAATCAGCAGCAACAGACAATAGATGATACTGTGTTTGATAATGAGAGTGACACACCCGTCATTCAATTCATAA CCCAGACGCTAAGTCTAGCCATTCAAAAACGCGCTTCAGATATCCATTTTGAGCCTTATCAACACCACTATCGTGTTCGT TTAAGAATTGATGGTGTGTTGCATGAATTCACCCCACCCGAGGCCGAATGGGCAGCTCGGATTAGCAGTTGCCTGAAGGT CATGGCGAAATTAAATATTGCTGAACGGCGATTACCACAAGATGGTCAACTAACCTTACCCTTTGGTGATTCACACTATT CAATGCGGATAGCGACTCTCCCTACGCAATATGGTGAAAAAGTGGTATTGCGTATTCTTCAAATACAACAGCAAACCACG TTAGAAAAGCTGGGGATGACGGATGCGGCACTGAAACAATTAACACAGGCATTATCAGCACCACAAGGGCTGATTCTGGT CACCGGCCCTACCGGTAGTGGCAAAACCATTACGTTATATTGCAGTTTAGCGCGGCTGAATCAGACACAAAGAAACATCT GTAGCGTCGAAGATCCTATTGAGATCCCCGTCAATGGCATTAACCAAACCCAGGTAAACAGCAAGATCGGTCTGGATTTC TCTCGAATACTACGAGCCATCCTACGACAGGACCCTGATGTCATTATGGTTGGTGAAATTCGTGATAATGAAACCGCCAG TATCGCAGTTAACGCGGCCCAGACCGGGCATTTGGTCCTATCGACGCTGCACACTAACTCAACAGCAGAAACGCTGATAC GCATGGCACAAATGGGAATAGAACGCCATTTAATCGCCTCAAGTCTAAAACTCGTCATTGCTCAACGCTTGGTGCGCCGC CTATGTTTACATTGCCGCCAGGCTGCATCTCACCCCTTTATTCCACCAGCTCACATAAGGTCTGGTCCGATCCAACACTA TCTAGCTGTAGGTTGTGAGCATTGTTGTACGGGTTATTATGGCCGAACGGGTATTTATGAAATGCTGAGTGTAACGCCGC AGATTCAGCAAGCCATACTCAATAATGCCAGCCCTGTAAAACTGGTACAAATTGCCCAGAAGCAAGAACAAACAGCCTTA CTCTGCTCAGGTTTAGCTTTAATCGAAAAAGGCATCACTACCCTTAGTGAAATTAATCGTGTTGTGGGCTTCGTAGCAGA AACAGAGGTCACCTCTTGA Protein sequence : MAEFIVSSFETISDELHLLCRRYRAVALTLDGKSLSIASAQTVDEALLTALRFTCGRQVRVEYWPEAKIEQSLYLGSPTK NNLNSSINNGLNSALLSQKGGDPSRVKPHNQQQQTIDDTVFDNESDTPVIQFITQTLSLAIQKRASDIHFEPYQHHYRVR LRIDGVLHEFTPPEAEWAARISSCLKVMAKLNIAERRLPQDGQLTLPFGDSHYSMRIATLPTQYGEKVVLRILQIQQQTT LEKLGMTDAALKQLTQALSAPQGLILVTGPTGSGKTITLYCSLARLNQTQRNICSVEDPIEIPVNGINQTQVNSKIGLDF SRILRAILRQDPDVIMVGEIRDNETASIAVNAAQTGHLVLSTLHTNSTAETLIRMAQMGIERHLIASSLKLVIAQRLVRR LCLHCRQAASHPFIPPAHIRSGPIQHYLAVGCEHCCTGYYGRTGIYEMLSVTPQIQQAILNNASPVKLVQIAQKQEQTAL LCSGLALIEKGITTLSEINRVVGFVAETEVTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-72 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_005510075.1 | putative type II secretion system protein | VFG0112 | Protein | 3e-84 | 48 |
| hofB | YP_005510075.1 | putative type II secretion system protein | VFG2426 | Protein | 8e-75 | 46 |
| hofB | YP_005510075.1 | putative type II secretion system protein | VFG2048 | Protein | 3e-74 | 46 |
| hofB | YP_005510075.1 | putative type II secretion system protein | VFG0182 | Protein | 2e-70 | 46 |
| hofB | YP_005510075.1 | putative type II secretion system protein | VFG0233 | Protein | 4e-76 | 46 |
