Gene Information

Name : YPD8_0242 (YPD8_0242)
Accession : YP_005507325.1
Strain : Yersinia pestis D182038
Genome accession: NC_017160
Putative virulence/resistance : Virulence
Product : putative type III secretion apparatus protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 271475 - 272542 bp
Length : 1068 bp
Strand : +
Note : -

DNA sequence : 
ATGTCCACTGAAAAGAATGAAAAACCCACGCCCAAGCGCCTTAAGGAAGCCAAAGAAAAAGGGCAGGTAGTCAAAAGTGT
TGAGATAACCTCCGGCGTACAGTTGGTGGCGCTGGTTATCTACTTTTTACTGACAGGATATAGCTTGGTCGAGCAGGCTA
AAGCCCTTATCCGCAGTTCAATCATACAATTACAGCAACCACTTACTCTGGCTTTAGCCCGTATCGGTGCCGAGTGCATG
ACGGTATTGATGCATATCGTGGTGGTCTTGGGCGGGGCGCTGATCGTGGTCACCATTATTGCCGGTATTGCTCAGGTTGG
GCCGTTGTTGGCGACCAAAGCGGTGTCGTTTAAAGGTGAGCGAATTAACCCCATTCAAAATGCTAAACAACTTTTCTCAT
TGCGCAGCGTGTTTGAGCTGATGAAATCATTATTGAAAGTGGGGGTGCTAACGCTGATTTTTGGTTACTTATTGATGCAG
TATGCGCCCTCTTTTGGTTATTTGACCCACTGTGGCAGTCGCTGTGCTCTCCCGGTATTCTCGACATTAATGGGGTGGTT
ATTAGGCTCACTGATTGCCTGCTATCTGGTTTTTTCACTGATGGATTATGCTTTTCAGCGCTACACCATCATGAAACAAC
TGAAAATGTCCCATGATGAGGTCAAGCGGGAGTATAAAGACAGTAATGGGGATCCGCACATTAAGCAGAAGCGGCGGCAG
CTACAGCATGAAGTACAAAGCGGTAGTTTTGCCACTAACGTGCGCCGTTCCACCGCGGTAGTCCGTAACCCGACACATTT
TGCCGTTTGTCTGATTTATCACCCAGAAGAGACGCCGCTACCGATAGTGATTGAAAAAGGTCATGACGAGCAGGCTGCAT
TGATTGTGAGCCTCGCAGAGCAGAGCGGTATCCCTGTGGTAGAAAACATTGCGCTGGCGCGCGCATTACACCGTGATGTT
GCTTGTGGTGACACCATCCCGGAACAATTCTTCGAGCCAGTTGCTGCGCTCTTACGTATGGCACTGGAGTTGGATTATCA
GCCATCAAGTGATGATCCACCGCGCTAG

Protein sequence : 
MSTEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSIIQLQQPLTLALARIGAECM
TVLMHIVVVLGGALIVVTIIAGIAQVGPLLATKAVSFKGERINPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ
YAPSFGYLTHCGSRCALPVFSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQ
LQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQSGIPVVENIALARALHRDV
ACGDTIPEQFFEPVAALLRMALELDYQPSSDDPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 5e-161 100
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 8e-72 49
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 8e-72 49
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 1e-70 49
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 1e-71 48
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 9e-72 48
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-62 42
escU AAK26703.1 EscU Virulence LEE Protein 3e-62 42
escU AAL57530.1 EscU Virulence LEE Protein 3e-62 42
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 6e-62 42
escU CAI43886.1 EscU protein Virulence LEE Protein 3e-62 42
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 6e-62 42
escU CAC81850.1 EscU protein Virulence LEE II Protein 2e-62 42
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 6e-62 42
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 4e-62 42
escU AAC38372.1 EscU Virulence LEE Protein 5e-62 42
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 3e-62 42
escU AAC31525.1 L0046 Virulence LEE Protein 4e-62 42
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-58 41
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 5e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD8_0242 YP_005507325.1 putative type III secretion apparatus protein VFG0522 Protein 5e-72 48
YPD8_0242 YP_005507325.1 putative type III secretion apparatus protein VFG0718 Protein 3e-62 42
YPD8_0242 YP_005507325.1 putative type III secretion apparatus protein VFG0824 Protein 2e-62 42