Gene Information

Name : YPD8_pCD0057 (YPD8_pCD0057)
Accession : YP_005506984.1
Strain :
Genome accession: NC_017157
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 58314 - 58631 bp
Length : 318 bp
Strand : -
Note : -

DNA sequence :
ATGACTCAACCTAAACAGACCAAACGCCGTTTTTCTCCTGAATTCAAACTGGAAGCTATTGAGCAGGTCGTTAAGTATCA
GCGGTCAACCATCGAGGTTGCACGCGCTCTGGAGCTGGATCCCAGCCAATTGCGTAAATGGATACGCCAGTACAAAGAAG
AAGTCAGCGGGGTGACGCCGGACAATCCTGCACTGACACCAGAGCAACGTGAAATCCAGTCGCTCAGGGCGCAGATTAAA
CGGCTGGAAATGGAAAAAGAAATACTAAAGCAGGCAGCCGTGTTGATGAGCGAGTTCCCCATCAAATCTTTGCGTTAA

Protein sequence :
MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIK
RLEMEKEILKQAAVLMSEFPIKSLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42047.1 hypothetical protein Not tested PAI II 536 Protein 6e-30 71
unnamed CAD33780.1 putative transposase Not tested PAI I 536 Protein 8e-29 70
RS05 AAP82950.1 putative transposase Not tested PAPI-2 Protein 5e-14 50
orfA AGK07052.1 IS1359 transposase; OrfA Not tested SGI1 Protein 1e-13 46
orfA ACX47959.1 IS1359 transposase; OrfA Not tested SGI1 Protein 1e-13 46
VPI2_0009c ACA01826.1 transposase OrfAB subunit A Not tested VPI-2 Protein 1e-13 46
orfA AGK06911.1 IS1359 transposase; OrfA Not tested SGI1 Protein 1e-13 46
unnamed AGK06948.1 IS1359 transposase; OrfA Not tested SGI1 Protein 1e-13 46
VC1790 NP_231425.1 transposase OrfAB subunit A Not tested VPI-2 Protein 2e-13 46
orfA AGK06994.1 IS1359 transposase; OrfA Not tested SGI1 Protein 1e-13 46
orfA YP_001217330.1 transposase OrfAB subunit A Not tested VPI-2 Protein 2e-13 46
l7045 CAD33744.1 - Not tested PAI I 536 Protein 1e-13 42
orfA CAE85179.1 OrfA protein, IS911 Not tested PAI V 536 Protein 1e-13 42
api80 CAF28554.1 putative transposase Not tested YAPI Protein 6e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD8_pCD0057 YP_005506984.1 hypothetical protein VFG1566 Protein 2e-30 71
YPD8_pCD0057 YP_005506984.1 hypothetical protein VFG1521 Protein 3e-29 70
YPD8_pCD0057 YP_005506984.1 hypothetical protein VFG1123 Protein 5e-14 46
YPD8_pCD0057 YP_005506984.1 hypothetical protein VFG1485 Protein 5e-14 42