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Name : yscC (YPD8_pCD0039) Accession : YP_005506966.1 Strain : Genome accession: NC_017157 Putative virulence/resistance : Virulence Product : outer membrane secretin precursor Function : - COG functional category : - COG ID : - EC number : - Position : 37114 - 38937 bp Length : 1824 bp Strand : + Note : - DNA sequence : ATGGCTTTTCCGCTACATTCTTTTTTCAAGCGCGTACTCACCGGGACGTTACTGTTACTTTCTAACTATAGCTGGGCGCA AGAACTTGATTGGTTGCCTATACCTTATGTTTATGTGGCGAAGGGGGAAAGTTTACGCGATTTATTAATTGATTTCAGCG CTAATTATGATGCTACAGTGGTAGTAAGCGATAAGATTAATGACAAAGTTTCCGGCCAGTTTGAGCATGATAACCCTCAG GATTTCCTACAGCATATTGCCTCCCTTTACAATTTGGTTTGGTACTATGATGGCAATGTGCTCTACATTTTTAAAAATAG TGAGGTAGCGTCTCGTCTCATTCGTTTACAGGAAAGTGAGGCCGCAGAGTTAAAGCTGGCATTACAACGTTCTGGTATAT GGGAGCCTCGTTTTGGCTGGCGCCCTGATGCTAGCAACCGCCTTGTTTACGTCTCTGGTCCTCCTCGTTATCTTGAATTG GTTGAACAGACCGCAGCCGCATTGGAACAACAGACGCAAATTCGCAGTGAAAAAACAGGGGCATTAGCGATTGAGATTTT CCCTCTCAAATATGCATCAGCGAGCGATCGAACTATTCATTACCGTGATGACGAAGTGGCTGCTCCTGGGGTTGCAACGA TACTTCAACGCGTGTTAAGCGATGCCACAATCCAACAAGTGACAGTGGATAATCAGAGAATACCGCAGGCCGCTACCCGG GCTTCAGCTCAAGCCAAGGTTGAAGCGGATCCATCGCTCAATGCGATAATAGTGCGCGATTCTCCTGAGCGTATGCCAAT GTATCAACGGTTAATTCATGCGCTTGATAAACCTAGCGCTCGTATTGAAGTGGCGTTATCCATTGTCGATATAAATGCCG ACCAACTTACTGAATTAGGTGTGGACTGGCGAGTTGGCATTCGTACTGGCAACAATCATCAGGTGGTAATAAAAACAACC GGGGATCAAAGTAACATCGCTTCAAACGGTGCATTGGGTAGTTTGATTGATGCTCGCGGGCTTGACTACCTATTAGCAAG AGTCAATTTACTTGAAAATGAAGGTTCGGCTCAAGTTGTTTCACGTCCGACCCTGCTAACACAAGAAAATGCCCAAGCGG TGATTGATCACCATGAAACCTATTACGTCAAAGTGACAGGTAAAGAAGTGGCTGAACTGAAAGGGATCACCTACGGCACT ATGCTGCGTATGACACCAAGGGTGCTGACTCAAGGAGATAAGTCAGAAATCAGTCTCAATCTACACATTGAGGATGGGAA CCAAAAACCGAATAGTTCAGGGATTGACGGAATCCCCACTATCAGTCGTACGGTCGTTGATACTGTCGCTCGCGTGGGAC ATGGCCAGAGTTTGATTATTGGTGGTATTTATCGTGACGAATTGAGTGTTGCTCTTAGTAAGGTGCCTTTGCTTGGTGAT ATTCCTTATCTTGGCGCACTTTTCCGCCGTAAAAGTGAGTTAACTCGCCGTACGGTACGGCTGTTTATCATCGAACCACG GATTATTGACGAAGGTATTGCGCATCATTTAGCGTTAGGTAATGGTCGGGATCTACGTACTGGTATCTTAGCTGTTGATG AAATATCTAATCAAAGCACTACCTTGAATAAGTTATTAGGTGGCTTCCAGTGTCAGCCTTTAAACAAAGCGCAAGAAGTG CAGAAATGGCTGAGTCAAAACAATAAATCATCCTATCTTACTCAGTGCAAGATGGACAAAAGTTTGGGATGGCGCGTGGT TGAAGGTGCTTGTACTCCCGCGGAATCATGGTGTGTTTCAGCGCCTAAGCGTGGCGTATTGTGA Protein sequence : MAFPLHSFFKRVLTGTLLLLSNYSWAQELDWLPIPYVYVAKGESLRDLLIDFSANYDATVVVSDKINDKVSGQFEHDNPQ DFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKLALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLEL VEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATR ASAQAKVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTT GDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTGKEVAELKGITYGT MLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGD IPYLGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGRDLRTGILAVDEISNQSTTLNKLLGGFQCQPLNKAQEV QKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscC | YP_005506966.1 | outer membrane secretin precursor | VFG0402 | Protein | 0.0 | 100 |
| yscC | YP_005506966.1 | outer membrane secretin precursor | VFG0211 | Protein | 0.0 | 64 |
