Gene Information

Name : yscQ (YPD8_pCD0032)
Accession : YP_005506959.1
Strain :
Genome accession: NC_017157
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 30701 - 31618 bp
Length : 918 bp
Strand : +
Note : -

DNA sequence : 
TTGTTAACCTTGCCACAGGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCAACAAAACTACTTGTG
GGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGAAGGGAA
CGCACTTCACGCTCTACTGTTTTGGCAATGATCTGGCTAACTGGTTAACCGCCGACTTACTAGGGGCTCCATTCTTTACT
CTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATATAGCGAC
AGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGCTAACCT
CAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTATTTCTTTGCGT
TGGCATAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGGGAGTGG
GCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGGAGTTTA
TCGGTATGAGTCATGAATCTGACGAACTTAACCCCGAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTTAGCTTT
GAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAACACCTGT
TGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGGCGCCTCGGGG
TTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPFFT
LPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILISLR
WHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQVSF
EVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 1e-60 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscQ YP_005506959.1 type III secretion protein VFG0393 Protein 4e-138 99
yscQ YP_005506959.1 type III secretion protein VFG0189 Protein 7e-45 41