Gene Information

Name : YPD4_0956 (YPD4_0956)
Accession : YP_005504168.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Unknown
Product : putative prophage integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1234774 - 1235973 bp
Length : 1200 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAAGGACAACACGCCCCCTCACCCACACCGAAGTACAAAAAGCAAAAGCCACCGACAAAGACCTAACCCTCCATGA
TGGTGATGGTTTATTTTTGCTAGTCAAAACTACCGGCAAGAAAATTTGGCGTTTCCGCTATCAGCTTCCCAACAGTAGCA
AGCGCACTATGATCAGCCTCGGTGCTTACCCAGCACTATCCCTCGCAGATGCCAGAGAGATACGCGCAGAAAAACTAGCG
ATGTTAGTCAGAGGGACAGACCCTCAAACGAGGGCTGGTGAAGAGGCTGAAAAGCTCCAGATAGCGGAGGAAAGCATTTT
TGTGAATGTCGCCCGCAAATGGTTCGAGTTGAAAGAAAGCCATGTTAGCGCAGCCCATGCGAAAGATATTTGGCGTTCTA
TTGAAAAAGACATCTTACCCAGCATCGAAAATATTCCCATCCAAGAACTTAAAGCACGAACTCTGATTCAAGTATTGGAG
CCAATCAAAGCACGTGGAGCATTAGAGACGGTCAGGCGATTGGTACAACGTATAAACGAGATAATGATCTATGCGGTCAA
TGTAGGTTTGATTGATGCTAACCCAGCTTCAGGTATCGGTAATGCTTTTGAACGCCCCAAGAAGCAGCATATGCCCACCA
TCAGACCTGAAGAACTACCTAAACTCATGCGTACCATTGCCATGAGCAATCTCTCACTGCCAACCCGCTGCTTACTTGAA
TGGCAATTACTAACTCTGATACGCCCCGCTGAAGCATCAGCAACAGCTTGGATAGAGATCGATTTAGAGAATAAGCAGTG
GTGTATACCGGCAGAACGAATGAAAGCAAAGCGCGACCATATAGTCCCGTTGTCGGAACAAGCCTTAGAGTTGCTGGAAA
TAATGCGTCCAATTAGTGGTAATCGTCAGCACGTATTCCCAAGTCGCAATGACCCACGTAATCACATGAATAGCCAAACA
GCAAATGCAGCCTTGAAACGTATTGGTTATGGAGGGAAGCTCGTTGCTCACGGTTTACGTTCTATCGCCAGTACAGCCAT
GAATGAGGCTGGGTTTAATGCTGATGTGATTGAGGCTGCGCTAGCGCATAGTGATAAGAATGAAGTCAGGAAAGCTTATA
ATCGTTCTACCTATCTCATACAACGCCAAGAGTTAATGAATTGGTGGGGATTAGAGATATACACTAAAAGAAGTATTTAA

Protein sequence : 
MARTTRPLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPALSLADAREIRAEKLA
MLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAHAKDIWRSIEKDILPSIENIPIQELKARTLIQVLE
PIKARGALETVRRLVQRINEIMIYAVNVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLE
WQLLTLIRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVFPSRNDPRNHMNSQT
ANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDKNEVRKAYNRSTYLIQRQELMNWWGLEIYTKRSI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-102 53
int AAK20773.1 integrase Not tested VPI Protein 1e-97 50
int AAK20803.1 integrase Not tested VPI Protein 1e-97 50
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-97 50
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-97 50
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-97 50
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-85 46
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-85 46
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-85 46
int CAC39282.1 integrase Not tested LPA Protein 5e-65 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-65 41
int AAD44730.1 Int Not tested SHI-2 Protein 2e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_0956 YP_005504168.1 putative prophage integrase VFG1092 Protein 2e-85 46