Gene Information

Name : YPD4_0336 (YPD4_0336)
Accession : YP_005503548.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 397401 - 398567 bp
Length : 1167 bp
Strand : -
Note : -

DNA sequence :
ATGGTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGCTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCA
CGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCCCGTCCCTGCGATCGCTGGCTCG
AAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCTTGATGAAAATCTGGTAACTTCG
ACAAACACCCCCTGCATCATCCACTCTCCATCTACGACTCATTCTGCAGAGGAGTGGCGTGATGATGGAACTGCAACATC
AACGACTGATGGCGCTCGCCGGGCAGTTGCAACTGGAAAGCCTTATAAGCGCAGCGCCTGCGCTGTCACAACAGGCAGTA
GACCAGGAATGGAGTTATATGGACTTCCTGGAGCATCTGCTTCATGA

Protein sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVTS
TNTPCIIHSPSTTHSAEEWRDDGTATSTTDGARRAVATGKPYKRSACAVTTGSRPGMELYGLPGASAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 7e-154 99
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 5e-154 99
y2411 NP_669718.1 transposase Not tested HPI Protein 7e-154 99
api83 CAF28557.1 transposase Not tested YAPI Protein 5e-154 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 7e-154 99
unnamed CAA21403.1 - Not tested HPI Protein 7e-154 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 7e-153 98
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 7e-153 98
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-152 98
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 7e-153 98
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 7e-153 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_0336 YP_005503548.1 transposase VFG1607 Protein 4e-153 98
YPD4_0336 YP_005503548.1 transposase VFG1461 Protein 7e-153 98
YPD4_0336 YP_005503548.1 transposase VFG1514 Protein 4e-153 98
YPD4_0336 YP_005503548.1 transposase VFG1626 Protein 4e-153 98