Name : hofB (YPD4_3010) Accession : YP_005506217.1 Strain : Yersinia pestis D106004 Genome accession: NC_017154 Putative virulence/resistance : Virulence Product : putative type II secretion system protein Function : - COG functional category : - COG ID : - EC number : - Position : 3820771 - 3822294 bp Length : 1524 bp Strand : + Note : - DNA sequence : GTGTCCTCATTTGAAACAATTAGTGATGAATTACACCTTCTCTGTCGGCGTTATCGGGCAGTGGCACTCACTCTTGATGG TAAAAGCCTTTCGATAGCTTCAGCCCAGACCGTTGATGAAGCGTTATTGACCGCGTTGCGTTTCACATGTGGCCGTCAAG TCAGAGTGGAATATTGGCCCGAAGCCAAGATTGAACAATCATTGTATTTGGGGAGCCCGACGAAAAATAACCTAAACAGT AGTATTAACAACGGGCTAAATAGCGCGTTGTTATCCCAAAAGGGAGGTGATCCGTCGCGAGTAAAACCGCACAATCAGCA GCAACAGACAATAGATGATACTGTGTTTGATAATGAGAGTGACACACCCGTCATTCAATTCATAACCCAGACGCTAAGTC TAGCCATTCAAAAACGCGCTTCAGATATCCATTTTGAGCCTTATCAACACCACTATCGTGTTCGTTTAAGAATTGATGGT GTGTTGCATGAATTCACCCCACCCGAGGCCGAATGGGCAGCTCGGATTAGCAGTTGCCTGAAGGTCATGGCGAAATTAAA TATTGCTGAACGGCGATTACCACAAGATGGTCAACTAACCTTACCCTTTGGTGATTCACACTATTCAATGCGGATAGCGA CTCTCCCTACGCAATATGGTGAAAAAGTGGTATTGCGTATTCTTCAAATACAACAGCAAACCACGTTAGAAAAGCTGGGG ATGACGGATGCGGCACTGAAACAATTAACACAGGCATTATCAGCACCACAAGGGCTGATTCTGGTCACCGGCCCTACCGG TAGTGGCAAAACCATTACGTTATATTGCAGTTTAGCGCGGCTGAATCAGACACAAAGAAACATCTGTAGCGTCGAAGATC CTATTGAGATCCCCGTCAATGGCATTAACCAAACCCAGGTAAACAGCAAGATCGGTCTGGATTTCTCTCGAATACTACGA GCCATCCTACGACAGGACCCTGATGTCATTATGGTTGGTGAAATTCGTGATAATGAAACCGCCAGTATCGCAGTTAACGC GGCCCAGACCGGGCATTTGGTCCTATCGACGCTGCACACTAACTCAACAGCAGAAACGCTGATACGCATGGCACAAATGG GAATAGAACGCCATTTAATCGCCTCAAGTCTAAAACTCGTCATTGCTCAACGCTTGGTGCGCCGCCTATGTTTACATTGC CGCCAGGCTGCATCTCACCCCTTTATTCCACCAGCTCACATAAGGTCTGGTCCGATCCAACACTATCTAGCTGTAGGTTG TGAGCATTGTTGTACGGGTTATTATGGCCGAACGGGTATTTATGAAATGCTGAGTGTAACGCCGCAGATTCAGCAAGCCA TACTCAATAATGCCAGCCCTGTAAAACTGGTACAAATTGCCCAGAAGCAAGAACAAACAGCCTTACTCTGCTCAGGTTTA GCTTTAATCGAAAAAGGCATCACTACCCTTAGTGAAATTAATCGTGTTGTGGGCTTCGTAGCAGAAACAGAGGTCACCTC TTGA Protein sequence : MSSFETISDELHLLCRRYRAVALTLDGKSLSIASAQTVDEALLTALRFTCGRQVRVEYWPEAKIEQSLYLGSPTKNNLNS SINNGLNSALLSQKGGDPSRVKPHNQQQQTIDDTVFDNESDTPVIQFITQTLSLAIQKRASDIHFEPYQHHYRVRLRIDG VLHEFTPPEAEWAARISSCLKVMAKLNIAERRLPQDGQLTLPFGDSHYSMRIATLPTQYGEKVVLRILQIQQQTTLEKLG MTDAALKQLTQALSAPQGLILVTGPTGSGKTITLYCSLARLNQTQRNICSVEDPIEIPVNGINQTQVNSKIGLDFSRILR AILRQDPDVIMVGEIRDNETASIAVNAAQTGHLVLSTLHTNSTAETLIRMAQMGIERHLIASSLKLVIAQRLVRRLCLHC RQAASHPFIPPAHIRSGPIQHYLAVGCEHCCTGYYGRTGIYEMLSVTPQIQQAILNNASPVKLVQIAQKQEQTALLCSGL ALIEKGITTLSEINRVVGFVAETEVTS |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-72 | 45 |
gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-72 | 45 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
hofB | YP_005506217.1 | putative type II secretion system protein | VFG0112 | Protein | 3e-84 | 48 |
hofB | YP_005506217.1 | putative type II secretion system protein | VFG2426 | Protein | 7e-75 | 46 |
hofB | YP_005506217.1 | putative type II secretion system protein | VFG2048 | Protein | 4e-74 | 46 |
hofB | YP_005506217.1 | putative type II secretion system protein | VFG0182 | Protein | 2e-70 | 46 |
hofB | YP_005506217.1 | putative type II secretion system protein | VFG0233 | Protein | 3e-76 | 46 |