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Name : YPD4_0224 (YPD4_0224) Accession : YP_005503436.1 Strain : Yersinia pestis D106004 Genome accession: NC_017154 Putative virulence/resistance : Virulence Product : type III secretion protein Function : - COG functional category : - COG ID : - EC number : - Position : 255724 - 257295 bp Length : 1572 bp Strand : + Note : - DNA sequence : TTGATAGTCGGTTTACGCCAAAAACCGTATTTAAATTTAAGAAATTATAAGTGGATGTCGCTAATCTATATCATGAGAAA AATAACGGGTCTGATATTACTTTTTTTTGCCACATTGTTGCCTTATGGGAAATTTTCTTATGTAAAAGCGATTCCTTGGC AAGGCGAGCCTTTTTTTATTTATAGCCGAGGCATGACAGTTTCTGAATTATTAAAAGATTTGGGGATGAATTACGGTATT CCTGTGGTGATCAGTTCGGAAATAAACGAGCACTTTACTGGAAAGATTAGGGATAAGACACCTGAAAAAATCCTATCGGA GTTGGCTGGGCGATATAATATAACGTGGTATTACGATGGTGAAACACTCTATTTTTACCCAGTTCAATCAATCAAGCGGG AGTTTATATCCCCCGATGGTCTGGCTGCCAATACGTTAGTTAAATATCTCCAGCGCGGTGACGTGCTGGCGGGGAAAAAC TGTGCCATAAAAGCGATCCCCCACCTTGATACCCTTGAGGTCAAGGGAGTGCCTATCTGCATCGAACGCGTAAAGTCAGT AAGCAAAATGCTTTCTGAGCAAGTTCGTCACCAAAACCAAAATAAAGAAACAGTGAAAGTTTTCCCGCTGAAATATGCTT CAGCAGCGGATTCAGATTATCAGTACCGAGATCAAAACGTCAGATTACCGGGGTTGGTCAGTGTGTTACGTGAGTTGAAC CAAGGGAATAATTTGCCTTTGGCGGGCGGTAACCAACCAGATGGAAATCAAGCAAGCTCACCGGTGTTTTCGGCTGATCC TCGGCAAAATGCCGTCATTATTCGCGATCGCCAGGCTAATATGCCGATTTATCGCAGCTTGATTACCCAACTGGATCAGC GGCCAATTCAGATAGAAATTTCTGTCACTATTATTGATGTTGATGCGGGAGATATCAGCCAACTGGGTGTTGATTGGTCT GCATCTGCTTCTATTGGTGGAACGGGGGTCTCATTTAATAGCACCTTCGCCAAGAATAATGCTGAAGGCTTTTCTACCGT GATTGGTGATACGGGGAACTTTATGGTTCGTCTGAATGCGTTACAAAAAAATTCACGAGCCAGAATTTTATCTCAACCTT CAGTGGTGACCCTGAACAATATTCAGGCGGTACTGGATAAAAACGTGACGTTTTATACCAAGCTGCAAGGTGAGAAAGTG GCCAAACTTGAATCTGTCACTTCAGGGTCATTACTGCGAGTGACGCCAAGAATGATCGAGACCGAAGGGGTACAAGAGGT TTTACTGAATCTCAATATTCAGGATGGTCAGCAGCAAGCTTCTACCAATAGTAATGAGCCATTACCCGAAATACGAAACT CAGATATTTCGACGCAGGCCACGCTACAGGTTGGACAAAGTTTACTCTTGGGCGGATTTATTCAGGACACGCAGATTGAG TCACAAAATAAAATTCCTTTACTGGGCGATATTCCGCTATTAGGTGGGTTGTTCCGTAGTACAGATAAACAATCTCACAG CGTGGTCAGACTCTTCCTGATCAAGGCCGTTCCGGTTAATGCAGGGGAATAA Protein sequence : MIVGLRQKPYLNLRNYKWMSLIYIMRKITGLILLFFATLLPYGKFSYVKAIPWQGEPFFIYSRGMTVSELLKDLGMNYGI PVVISSEINEHFTGKIRDKTPEKILSELAGRYNITWYYDGETLYFYPVQSIKREFISPDGLAANTLVKYLQRGDVLAGKN CAIKAIPHLDTLEVKGVPICIERVKSVSKMLSEQVRHQNQNKETVKVFPLKYASAADSDYQYRDQNVRLPGLVSVLRELN QGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQANMPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWS ASASIGGTGVSFNSTFAKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKV AKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSLLLGGFIQDTQIE SQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLIKAVPVNAGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0257 | YP_002345337.1 | type III secretion protein | Virulence | Not named | Protein | 0.0 | 100 |
| spiA | AAC44301.1 | SpiA | Virulence | SPI-2 | Protein | 1e-117 | 54 |
| ssaC | NP_460359.1 | outer membrane secretin precursor | Virulence | SPI-2 | Protein | 2e-117 | 54 |
| ssaC | YP_216402.1 | secretion system apparatus protein SsaC | Virulence | SPI-2 | Protein | 6e-117 | 53 |
| spiA | NP_456134.1 | putative outer membrane secretory protein | Virulence | SPI-2 | Protein | 5e-117 | 53 |
| spiA | NP_805065.1 | outer membrane secretory protein | Virulence | SPI-2 | Protein | 5e-117 | 53 |
| escC | CAI43881.1 | EscC protein | Virulence | LEE | Protein | 8e-108 | 49 |
| escC | AAC38377.1 | EscC | Virulence | LEE | Protein | 1e-106 | 49 |
| escC | YP_003223482.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 1e-107 | 49 |
| escC | YP_003232146.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 1e-107 | 49 |
| escC | AAK26708.1 | EscC | Virulence | LEE | Protein | 8e-108 | 49 |
| escC | AAL57535.1 | EscC | Virulence | LEE | Protein | 8e-108 | 49 |
| escC | CAC81855.1 | EscC protein | Virulence | LEE II | Protein | 8e-108 | 49 |
| escC | YP_003236095.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 4e-107 | 49 |
| escC | NP_290275.1 | hypothetical protein | Virulence | LEE | Protein | 3e-107 | 49 |
| ECs4575 | NP_312602.1 | EscC | Virulence | LEE | Protein | 3e-107 | 49 |
| escC | AAC31520.1 | L0041 | Virulence | LEE | Protein | 2e-107 | 49 |
| escC | ACU09465.1 | type III secretion outer membrane pore YscC/HrcC family | Virulence | LEE | Protein | 2e-107 | 49 |
| escC | AFO66299.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-109 | 49 |
| escC | AFO66408.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-109 | 49 |
| unnamed | AAL06362.1 | EscC | Virulence | LEE | Protein | 1e-107 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPD4_0224 | YP_005503436.1 | type III secretion protein | VFG0495 | Protein | 7e-118 | 54 |
| YPD4_0224 | YP_005503436.1 | type III secretion protein | VFG0723 | Protein | 8e-107 | 49 |
| YPD4_0224 | YP_005503436.1 | type III secretion protein | VFG0819 | Protein | 1e-107 | 49 |
