Gene Information

Name : YPD4_1733 (YPD4_1733)
Accession : YP_005504944.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Unknown
Product : transposase for insertion sequence IS100
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2235925 - 2236710 bp
Length : 786 bp
Strand : +
Note : -

DNA sequence :
ATGGTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGCTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCTGATGGGGATCACTGTCGATGTTGA

Protein sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPDGDHCRC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec56 AAW51739.1 Aec56 Not tested AGI-3 Protein 1e-100 99
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 9e-121 99
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 4e-121 99
api83 CAF28557.1 transposase Not tested YAPI Protein 4e-121 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 3e-121 99
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 5e-121 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 3e-121 99
y2411 NP_669718.1 transposase Not tested HPI Protein 5e-121 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 3e-121 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 5e-121 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-121 99
unnamed CAA21403.1 - Not tested HPI Protein 5e-121 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_1733 YP_005504944.1 transposase for insertion sequence IS100 VFG1626 Protein 2e-121 99
YPD4_1733 YP_005504944.1 transposase for insertion sequence IS100 VFG1607 Protein 2e-121 99
YPD4_1733 YP_005504944.1 transposase for insertion sequence IS100 VFG1461 Protein 5e-121 99
YPD4_1733 YP_005504944.1 transposase for insertion sequence IS100 VFG1514 Protein 2e-121 99