Gene Information

Name : YPD4_1418 (YPD4_1418)
Accession : YP_005504629.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Virulence
Product : periplasmic-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1828778 - 1829746 bp
Length : 969 bp
Strand : -
Note : -

DNA sequence : 
ATGTTAATTAAGAAAAAAAGTCCTTATCTCAAAATGATAGAACGACTAAACTCCCCTTTTCTACGGGCTGCAGCCTTGTT
TACAATTGTCGCATTCTCATCGCTGATCAGTACCGCTGCTTTAGCAGAAAATAATCCCAGCGATACAGCCAAAAAATTCA
AAGTTGTGACTACATTCACAATCATTCAGGATATTGCACAAAATATCGCCGGTGATGTTGCCGTGGTGGAGTCAATAACC
AAGCCAGGCGCAGAGATTCATGACTATCAACCTACCCCACGAGATATTGTAAAAGCACAGTCAGCAGACCTTATCTTATG
GAATGGCATGAATCTGGAGCGTTGGTTTGAGAAGTTCTTCGAAAGTATTAAAGATGTCCCGTCTGCCGTCGTGACCGCAG
GTATTACACCCCTGCCTATCCGTGAAGGCCCCTATAGCGGCATTGCCAACCCACATGCCTGGATGTCGCCATCAAATGCG
CTAATATATATTGAGAATATCCGCAAAGCGTTAGTTGAACACGATCCCGCTCATGCAGAAACCTATAACCGTAACGCGCA
AGCCTATGCTGAAAAAATTAAGGCGCTAGATGCTCCACTGCGTGAGCGTTTATCTCGTATTCCTGCGGAACAGCGTTGGT
TAGTAACCAGTGAAGGGGCATTTAGTTATCTTGCCAAAGACTATGGTTTTAAAGAGGTTTACTTATGGCCAATCAATGCA
GAGCAACAAGGTATTCCGCAACAAGTTAGACACGTGATTGATATTATTCGCGAAAATAAAATTCCGGTGGTGTTTAGTGA
GAGTACTATTTCCGACAAACCCGCCAAACAAGTGAGTAAAGAAACCGGTGCACAATATGGCGGCGTGCTATATGTTGATT
CTCTGTCGGGCGAAAAAGGCCCGGTCCCCACTTACATCAGTTTAATTAACATGACTGTAGATACTATCGCTAAAGGATTC
GGTCAATGA

Protein sequence : 
MLIKKKSPYLKMIERLNSPFLRAAALFTIVAFSSLISTAALAENNPSDTAKKFKVVTTFTIIQDIAQNIAGDVAVVESIT
KPGAEIHDYQPTPRDIVKAQSADLILWNGMNLERWFEKFFESIKDVPSAVVTAGITPLPIREGPYSGIANPHAWMSPSNA
LIYIENIRKALVEHDPAHAETYNRNAQAYAEKIKALDAPLRERLSRIPAEQRWLVTSEGAFSYLAKDYGFKEVYLWPINA
EQQGIPQQVRHVIDIIRENKIPVVFSESTISDKPAKQVSKETGAQYGGVLYVDSLSGEKGPVPTYISLINMTVDTIAKGF
GQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-84 63
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 4e-84 63
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 4e-84 63
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 4e-84 63
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-84 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_1418 YP_005504629.1 periplasmic-binding protein BAC0439 Protein 3e-135 100
YPD4_1418 YP_005504629.1 periplasmic-binding protein BAC0349 Protein 2e-84 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_1418 YP_005504629.1 periplasmic-binding protein VFG0525 Protein 2e-84 63