Gene Information

Name : YPD4_1154 (YPD4_1154)
Accession : YP_005504365.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Virulence
Product : outer membrane usher protein PsaC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1477778 - 1480249 bp
Length : 2472 bp
Strand : +
Note : -

DNA sequence :
ATGAGCACTTCATTTTTAGTGGGTGCCCAGCGTTATTCTTTTGATCCCAATCTGCTAGTGGATGGCAATAACAACACTGA
TACCTCGTTATTTGAACAGGGCAATGAATTACCGGGCACCTATTTGGTGGATATTATCTTGAATGGGAATAAAGTGGACT
CTACGAATGTGACATTTCATTCGGAGAAATCGCCATCAGGAGAGCCTTTCTTGCAATCTTGCTTAACCAAGGAGCAGCTA
TCCCGCTATGGTGTGGATGTTGATGCCTATCCCGAGTTATCTCCAGCATTAAAAAACTCACAGACAAACCCGTGTGTCAA
TTTAGCCGCTATCCCTCAGGCCAGTGAAGAGTTCCAATTTTATAATATGCAGTTGGTACTGAGTATTCCACAAGCGGCTT
TACGGCCTGAAGGTGAAGTGCCAATAGAACGCTGGGATGATGGTATTACGGCTTTTTTGCTGAACTACATGGCAAATATC
AGTGAAACCCAGTTTCGTCAAAATGGTGGATACCGGCGTTCACAATATATCCAGTTATATCCCGGTTTAAATTTGGGGGC
GTGGCGTGTTCGTAATGCGACCAACTGGAGTCAATCTGGCGATAGGGGGGGTAAATGGCAAAGTGCTTATACCTATGCCA
CTCGTGGGATTTATCGTTTAAAGAGCCGGGTGACCTTAGGGGAGAGTTACACCCCAGGTGATTTTTTCGACAGCATTCCC
TTTCGTGGCGTGATGTTGGGGGACGATCCTAATATGCAGCCAAGTAACCAGCGGGATTTTATACCGGTGGTGCGTGGTAT
TGCCCGTAGTCAGGCGCAGGTGGAAATCAGACAAAATGGTTATCTGATTTATAGTACGGTGGTGCCGCCGGGGCCGTTTG
AACTCTCTGACGTGATCCCGAGTAAATCAGGCAGTGACCTACATGTTAGGGTGCTGGAAAGTAACGGGGCATCGCAGGCG
TTTATTGTGCCTTATGAGGTGCCAGCCATTGCATTGCGCAAAGGGCATTTGCGATACAATCTGGTGGCAGGGCAGTATCG
CCCCGCCAATGCTGATGTTGAGACGCCTCCGGTCGCTCAGGCAACCGTCGCCTACGGCTTGCCGTGGAACTTGACCGCAT
TTATCGGTGAGCAGTGGTCGCGGCATTATCAGGCAACCTCTGCCGGATTAGGGGGGCTATTGGGGGAGTATGGCGCATTG
TCATCCAGTATCACGCAGGCAACCAGTCAGTATCACCATCAACAACCGGTTAAAGGGCAAGCCTGGGAGGTTCGATACAA
CAAAACCTTACAAGCCTCTGATACGTCATTTTCATTGGTGAATAGTCAATACAGCACTAATGGTTTCAGTACGTTATCTG
ATGTATTACAAAGTTACCGGCAGAGCGGGAGTGGCGATAATAGAGATAAAATTGACGAAAATTCTCGGTCAAGGGATTTG
CGTAACCAAATCAGTGCGGTCATCGGGCAGTCATTGGGCAAGTTTGGCTACCTGAACCTTAATTGGTCGCGGCAGGTCTA
CCGTGGGCCGATTCCGGCTAAGAATTCATTGGGAATACACTATAACCTCAATGTCGGTAATAGTTTTTGGGCACTGAGTT
GGGTGCAAAATGCGAATGAGAACAAGAATGATCGAATATTGAGTTTGTCTGTCAGTATTCCGCTGGGAGGTCATCACGAT
ACTTATGCTTCCTATAGAATGACATCTTCCAACGGGAGCAATGATCATGAGATAGGAATGTACGGCCAGGCTTTTGACTC
TCGCTTGAGTTGGAGTGTGCGTCAGGCAGAGCATTATGGTCAACCCAACTCAGGGCATAACAGCGGCTCACTCAGGTTGG
GCTGGCAGGGTTCCTATGGCAATATCGCGGGAAATTACTACTATACTCCGAGCATACGTCAGTTATCCGCTGATGTTTCC
GGAGGGGCGATCATCCATCGGCATGGGCTGACATTAGGGCCGCAAATCAATGGCACCTCCGTGCTGGTTGAAGTTCCGGG
CGTCGGCGGGGTGACCACCACAGAAGATCGCCGTCTGAAAACAGATTTTCGCGGTTACAGCATTGTGTCTGGCCTCTCTC
CTTATCAGGAGCACGATATCGTGTTGGAAACTGCAGATTTACCGCCGGATGCGGAGGTGGCAAAAACAGATACCAAGGTC
TTGCCGACCGAGGGGGCGATTGTTCGTGCCAGTTTTAGCCCGCAAATCGGGGCAAAGGCGCTGATGACGATCACCCGCGC
TAATGGCCAAACCATTCCGTTTGGTGCGATGGCGAGCTTGGTTAATCAGTCGGCCAATGCAGCCATTGTCGATGAAGGGG
GGAAAGCCTATCTAACCGGGTTACCGGAAACAGGGCAGTTATTGGTGCAATGGGGTAAAGATGCGGGCCAACAATGCCGG
GTGGATTACCAGCTCTCGCCAGCGGAAAAAGGTGATACCGGGCTGTATATGCTCAGCGGAGTATGCCATTAA

Protein sequence :
MSTSFLVGAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQL
SRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLSIPQAALRPEGEVPIERWDDGITAFLLNYMANI
SETQFRQNGGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIP
FRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQA
FIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATSAGLGGLLGEYGAL
SSSITQATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSGDNRDKIDENSRSRDL
RNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQNANENKNDRILSLSVSIPLGGHHD
TYASYRMTSSNGSNDHEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVS
GGAIIHRHGLTLGPQINGTSVLVEVPGVGGVTTTEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAKTDTKV
LPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCR
VDYQLSPAEKGDTGLYMLSGVCH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
safC NP_454907.1 outer-membrane fimbrial usher protein Not tested SPI-6 Protein 6e-176 47
afaC AAD44022.2 AfaC Virulence PAI-I AL862 Protein 5e-160 44
afaC ADD91743.1 putative AfaC-VIII usher protein Not tested PAI-I AL862 Protein 5e-162 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_1154 YP_005504365.1 outer membrane usher protein PsaC VFG0853 Protein 5e-160 44
YPD4_1154 YP_005504365.1 outer membrane usher protein PsaC VFG0944 Protein 3e-157 43
YPD4_1154 YP_005504365.1 outer membrane usher protein PsaC VFG0849 Protein 6e-148 41
YPD4_1154 YP_005504365.1 outer membrane usher protein PsaC VFG0857 Protein 9e-143 41