Gene Information

Name : YPD4_0985 (YPD4_0985)
Accession : YP_005504197.1
Strain : Yersinia pestis D106004
Genome accession: NC_017154
Putative virulence/resistance : Unknown
Product : transposase for insertion sequence IS100
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1270201 - 1270944 bp
Length : 744 bp
Strand : -
Note : -

DNA sequence :
ATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTTCCTCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACC
CGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATGGTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGAT
ACAGCCGAATGCTGTACATCGAATTCACTGACAATATGCGTTATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGC
TTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATATGAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGG
TCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGGAGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGG
CACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACCCGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGC
CCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCACGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAA
GCATGAAACAATCCAGGCCCGTCCCTGCGATCGCTGGCTCGAAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAA
AAGAGTATGACGTGCATCTTGATGAAAATCTGGTGAACTTCGACAAACACCCCCTGCATCATCCACTCTCCATCTACGAC
TCATTCTGCAGAGGAGTGGCGTGA

Protein sequence :
MTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFR
FFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLR
PMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYD
SFCRGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 3e-120 100
y2411 NP_669718.1 transposase Not tested HPI Protein 3e-120 100
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 3e-120 100
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-120 100
unnamed CAA21403.1 - Not tested HPI Protein 3e-120 100
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-120 100
unnamed CAD33718.1 hypothetical protein Not tested PAI I 536 Protein 1e-99 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 3e-119 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 3e-119 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-119 99
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-118 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 3e-119 99
y1094 CAD66187.1 transposase Orf A, insertion element IS100 Not tested PAI III 536 Protein 5e-91 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1459 Protein 6e-100 99
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1607 Protein 2e-119 99
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1461 Protein 8e-119 99
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1514 Protein 2e-119 99
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1626 Protein 2e-119 99
YPD4_0985 YP_005504197.1 transposase for insertion sequence IS100 VFG1662 Protein 3e-91 98