Gene Information

Name : yscC (YPD4_pCD0038)
Accession : YP_005503184.1
Strain :
Genome accession: NC_017153
Putative virulence/resistance : Virulence
Product : outer membrane secretin precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 36202 - 37614 bp
Length : 1413 bp
Strand : +
Note : -

DNA sequence : 
TTGGCTGGGCGCCCTGATGCTAGCAACCGCCTTGTTTACGTCTCTGGTCCTCCTCGTTATCTTGAATTGGTTGAACAGAC
CGCAGCCGCATTGGAACAACAGACGCAAATTCGCAGTGAAAAAACAGGGGCATTAGCGATTGAGATTTTCCCTCTCAAAT
ATGCATCAGCGAGCGATCGAACTATTCATTACCGTGATGACGAAGTGGCTGCTCCTGGGGTTGCAACGATACTTCAACGC
GTGTTAAGCGATGCCACAATCCAACAAGTGACAGTGGATAATCAGAGAATACCGCAGGCCGCTACCCGGGCTTCAGCTCA
AGCCAAGGTTGAAGCGGATCCATCGCTCAATGCGATAATAGTGCGCGATTCTCCTGAGCGTATGCCAATGTATCAACGGT
TAATTCATGCGCTTGATAAACCTAGCGCTCGTATTGAAGTGGCGTTATCCATTGTCGATATAAATGCCGACCAACTTACT
GAATTAGGTGTGGACTGGCGAGTTGGCATTCGTACTGGCAACAATCATCAGGTGGTAATAAAAACAACCGGGGATCAAAG
TAACATCGCTTCAAACGGTGCATTGGGTAGTTTGATTGATGCTCGCGGGCTTGACTACCTATTAGCAAGAGTCAATTTAC
TTGAAAATGAAGGTTCGGCTCAAGTTGTTTCACGTCCGACCCTGCTAACACAAGAAAATGCCCAAGCGGTGATTGATCAC
CATGAAACCTATTACGTCAAAGTGACAGGTAAAGAAGTGGCTGAACTGAAAGGGATCACCTACGGCACTATGCTGCGTAT
GACACCAAGGGTGCTGACTCAAGGAGATAAGTCAGAAATCAGTCTCAATCTACACATTGAGGATGGGAACCAAAAACCGA
ATAGTTCAGGGATTGACGGAATCCCCACTATCAGTCGTACGGTCGTTGATACTGTCGCTCGCGTGGGACATGGCCAGAGT
TTGATTATTGGTGGTATTTATCGTGACGAATTGAGTGTTGCTCTTAGTAAGGTGCCTTTGCTTGGTGATATTCCTTATCT
TGGCGCACTTTTCCGCCGTAAAAGTGAGTTAACTCGCCGTACGGTACGGCTGTTTATCATCGAACCACGGATTATTGACG
AAGGTATTGCGCATCATTTAGCGTTAGGTAATGGTCGGGATCTACGTACTGGTATCTTAGCTGTTGATGAAATATCTAAT
CAAAGCACTACCTTGAATAAGTTATTAGGTGGCTTCCAGTGTCAGCCTTTAAACAAAGCGCAAGAAGTGCAGAAATGGCT
GAGTCAAAACAATAAATCATCCTATCTTACTCAGTGCAAGATGGACAAAAGTTTGGGATGGCGCGTGGTTGAAGGTGCTT
GTACTCCCGCGGAATCATGGTGTGTTTCAGCGCCTAAGCGTGGCGTATTGTGA

Protein sequence : 
MAGRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQR
VLSDATIQQVTVDNQRIPQAATRASAQAKVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLT
ELGVDWRVGIRTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH
HETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQS
LIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGRDLRTGILAVDEISN
QSTTLNKLLGGFQCQPLNKAQEVQKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscC AAO18033.1 LscC Virulence TTSS locus Protein 4e-145 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscC YP_005503184.1 outer membrane secretin precursor VFG0402 Protein 0.0 100
yscC YP_005503184.1 outer membrane secretin precursor VFG0211 Protein 5e-139 64