Gene Information

Name : yscQ (YPD4_pCD0030)
Accession : YP_005503176.1
Strain :
Genome accession: NC_017153
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 29371 - 30294 bp
Length : 924 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTTTGTTAACCTTGCCACAGGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCAACAAAACTA
CTTGTGGGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGA
AGGGAACGCACTTCACGCTCTACTGTTTTGGCAATGATCTGGCTAACTGGTTAACCGCCGACTTACTAGGGGCTCCATTC
TTTACTCTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATAT
AGCGACAGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGC
TAACCTCAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTATTTCT
TTGCGTTGGCATAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGG
GAGTGGGCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGG
AGTTTATCGGTATGAGTCATGAATCTGACGAACTTAACCCCGAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTT
AGCTTTGAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAAC
ACCTGTTGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGGCGCC
TCGGGGTTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF
FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS
LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQV
SFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 6e-61 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscQ YP_005503176.1 type III secretion protein VFG0393 Protein 4e-139 100
yscQ YP_005503176.1 type III secretion protein VFG0189 Protein 7e-45 41