Gene Information

Name : yopB (YPD4_pCD0018)
Accession : YP_005503164.1
Strain :
Genome accession: NC_017153
Putative virulence/resistance : Virulence
Product : secreted effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 18274 - 19347 bp
Length : 1074 bp
Strand : -
Note : -

DNA sequence : 
GTGAGTTCTCAGGGCGTACAGCTCCCTGCACCACTAGCAGTGGTTGCCAGCCAAGTTACTGAAGGACAACAGCAAGAAGT
CACTAAATTATTGGAGTCGGTCACCCGCGGCGCGGCAGGATCTCAACTGATATCAAATTATGTTTCAGTGCTAACGAAGT
TTACGCTTGCTTCACCTGATACATTTGAGATTGAGTTAGGTAAGCTAGTTTCTAATTTAGAAGAAGTACGCAAAGACATA
AAAATCGCTGATATTCAGCGTCTTCATGAACAAAACATGAAGAAAATTGAAGAGAATCAAGAGAAAATCAAAGAAACAGA
AGAGAATGCCAAGCAAGTCAAGAAATCCGGCATCGCATCAAAGATTTTTGGCTGGCTCAGCGCCATAGCCTCAGTGATTG
TCGGTGCCATCATGGTGGCCTCAGGGGTAGGAGCCGTTGCCGGTGCAATGATGGTTGCCTCAGGCGTAATTGGGATGGCG
AATATGGCAGTGAAACAAGCGGCGGAAGATGGCCTGATATCCCAAGAGGCAATGAAAATATTAGGGCCGATACTCACTGC
GATTGAAGTCGCATTGACTGTAGTTTCAACCGTAATGACCTTTGGCGGTTCGGCACTAAAATGCCTGGCTAATATTGGCG
CAAAACTCGGTGCTAACACCGCAAGTCTTGTGGCTAAAGGAGCCGAGTTTTCGGCCAAAGTTGCCCAAATTTCGACAGGC
ATATCAAACACTGTCGGGAGTGCAGTGACTAAATTAGGGGGCAGTTTTGCTGGTTTAACAATGAGCCATGCAATCCGTAC
AGGATCACAGGCAACACAAGTCGCCGTTGGTGTGGGCAGCGGAATAACTCAGACCATCAATAATAAAAAGCAAGCTGATT
TACAACATAATAACGCTGATTTGGCCTTGAACAAGGCAGACATGGCAGCGTTACAAAGTATTATTGACCGACTCAAAGAA
GAGTTATCCCATTTGTCAGAGTCACATCAACAAGTGATGGAACTGATTTTCCAGATGATTAATGCAAAAGGTGACATGCT
GCATAATTTGGCCGGCAGACCCCATACTGTTTAA

Protein sequence : 
MSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDI
KIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMA
NMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTG
ISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKE
ELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 8e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopB YP_005503164.1 secreted effector protein VFG0379 Protein 2e-135 99
yopB YP_005503164.1 secreted effector protein VFG0203 Protein 4e-44 42