Gene Information

Name : APA32_43180 (APA32_43180)
Accession : YP_005500484.1
Strain :
Genome accession: NC_017149
Putative virulence/resistance : Virulence
Product : type I/III endonuclease restriction R subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 139994 - 142552 bp
Length : 2559 bp
Strand : -
Note : Probably pseudogene, C-terminal domain of a gene truncated by transposon

DNA sequence :
GTGGACATGGTGCTGTTCCTTAACGGGCTGCCCATCGTCACGCTGGAGCTGAAGAACGCCTGGACCCACCAGACCGCCCG
CTACCACGGCCAGAAGCAGTACCGTGAGCGTGATGCAAACCAGACCCTGCTGCGCTTTGGCCGCGTGCTGGTCCACATGA
CCGCCGACACCGACGAGGTGTGGATGGCGACGAAGCTGGCGGGAGCCTCGACCTTCTTCCTGCCGTTCAACAAGGGGCAC
AACGAGGGCGCGGGCAACCCGCCGAACCCCAATGGCCACAAAACGTCCTACCTGTGGGAAGAGGTTCTGCAACCGCAGAG
CCTTGCCGGGATCATCCAGCATTTCGTCCTGCTGGAGGGCAAGAAGACCGACCCGCTGACGAAGAAGACGCTGATCTTCC
CGCGATATCACCAGCTGAATGTAGTCCGAAAGCTGCTGTCCCACGCCGCTCAGACGGGCGTAGGGCATAAATACCTGATC
CAGCACTCTGCCGGCTCGGGAAAATCCAACAGCATCACCTGGGCCGCCTACCAGCTGATCGAGACCTATCCGGCGAAGCT
AGACCTGCCCGGCGTCAGGGCGCTGGACGCCCCGCTGTTCGACAGCGTGATCGTCGTGACCGACCGCCGCCTGCTGGACA
AGCAGCTGCGCGACAACATCAAGGATTTCTCCGAGGTCAAAAATATCGTGGCCCCGGCGCTGAAGTCCTCGGACCTGAAA
GCAGCACTGGAGAACGGCAAGAAGATCATCATCACGACCATCCAGAAGTTCCCCTTCATCATCGACGGTATAGAGGATTT
GGGCGACAAGCGTTTCGCAGTGATCATCGACGAGGCGCACAGCGGCCAGAGCGGCATCGCTAGTGACAAGATGAATCAGG
CAATGGGCGGCGACCCAGACGAAGATGACGCGCAGGACAAGATTCTGGCGGCCATGCAGGCCCGCAAGATGCGCGGCAAT
GCGTCCTACTTTGCCTTCACCGCGACGCCGAAGCCGATCACCTTGGAGAAGTTCGGTGAGCAGCAGTCGGACGGCCGCTT
CCGCCCGTTCCACCTGTACAGCATGAAGCAGGCGATCGAGGAGGGCTTCATCCTCGACGTTTTGGCGAATTACACGACCT
ACAAGGGCTATTACGAGATCCAGAAGTCCATTGAGGACAATCCTCTGTTCGACACATCCAAGGCGCAGAAGAAGCTGCGC
GCCTATGTCGAGCGGAGCCAGCAGACGATCAACACCAAGGCCGAGATCATGGTCGAGAATTTCATCGACAAGGTGGTAAA
CCCCAAGAAATTGCGCGGCAAAGGCAAAGGGATGATCGTAACCCAAAATATCGAGGTGGCGATCCGCTACTACAAGGCCG
TACAGGCAGAGCTTGCCAAGCGCGGTAACCCGTTCAAGGCGCTAATCGCCTTCTCGGGCGAGAAGGAGGTCGATGGGGTC
AAGTACACCGAGACCGAGATGAATGGCGTACCTGAGGACAAGACCCGCAGCGAGTTTGATAAGGATGAATTCCGCCTGCT
GATCGTCGCAAACAAGTATCTCACCGGTTTCGACCAGCCGAAGCTCTGTGCGATGTACGTCGACAAAAAGCTGCAGTCGG
TTCTGGCAGTCCAGGCCCTGTCCCGTTTGAACCGGTCCTCCCCCAAGCTAGGCAAACGGACCGAGGATCTGTTCGTTCTC
GACTTCTTCAACTCGATCGAGGACATCAAGGCTGCCTTCGACCCGTTCTTCACGGTGACGACCCTATCCGAGGCGACGGA
CGTGAACGTTTTACACGAGCTGAAAGCAGCTTTGGATGATGTCGGCGTCTACGAATGGTCAGAGGTAGAGGAATTCTGCA
AAAGGTTCTTTGACGGCGAAGATTCCGAGAAGCTCAGCCCCCTGATTGACGTGGCTGCCGAACGTTTCAACACCGGCCTG
GAACTGGAAGACCCGGAGAAGATCGACTTCAAGATCAAAGCGAAGCAGTTCGTGAAGATCTACGGCCAGATGGCTGCAAT
CATGCCGTTCGAAGTGGAGGCTTGGGAGAAGCTCTTCTGGTTCCTGAAGTTCTTGGTCCCGAAGCTAAACATTAAGGACC
CGAACCAGGATGCGTTGGATGATCTTCTCAAGGCCGTTGACCTTTCGTCATATGGGCTAGAGCGGACAAAACTAAACCAG
ACCATCGGCCTGGACACTTCAGAAGCAGAGCTAGATCCACAGAACCCGACCCCCCGCGGCTATCGCGAAGGAGAGGTGCA
GGAAGACCCGTTGGAAGAGATCATCCGCAGCTTCAACGAACGTTGGTTCCAAGGCTGGAGCGCCACCCCGGAAGAACAAC
GGATCAAGTTTCTGAACATCGTTGAAAGTGTTCAGGCCCACCCCGATTTCGAGAAGAAATTTGATGAAAATTCTGATCCC
TACAGCCGTAACTTGGCATTTGAAAAAATTATGAAAGAAGTCATGCTAAAACGCCGGAAAGAGGAGTTGGAACTCTACAA
GCTTCACAACCAGGACGAGGCGTTCAGATCTGCACTATATCTAAGCGTCAAGGAGGCGCTGACACAAAGCCTGCGCTGA

Protein sequence :
MDMVLFLNGLPIVTLELKNAWTHQTARYHGQKQYRERDANQTLLRFGRVLVHMTADTDEVWMATKLAGASTFFLPFNKGH
NEGAGNPPNPNGHKTSYLWEEVLQPQSLAGIIQHFVLLEGKKTDPLTKKTLIFPRYHQLNVVRKLLSHAAQTGVGHKYLI
QHSAGSGKSNSITWAAYQLIETYPAKLDLPGVRALDAPLFDSVIVVTDRRLLDKQLRDNIKDFSEVKNIVAPALKSSDLK
AALENGKKIIITTIQKFPFIIDGIEDLGDKRFAVIIDEAHSGQSGIASDKMNQAMGGDPDEDDAQDKILAAMQARKMRGN
ASYFAFTATPKPITLEKFGEQQSDGRFRPFHLYSMKQAIEEGFILDVLANYTTYKGYYEIQKSIEDNPLFDTSKAQKKLR
AYVERSQQTINTKAEIMVENFIDKVVNPKKLRGKGKGMIVTQNIEVAIRYYKAVQAELAKRGNPFKALIAFSGEKEVDGV
KYTETEMNGVPEDKTRSEFDKDEFRLLIVANKYLTGFDQPKLCAMYVDKKLQSVLAVQALSRLNRSSPKLGKRTEDLFVL
DFFNSIEDIKAAFDPFFTVTTLSEATDVNVLHELKAALDDVGVYEWSEVEEFCKRFFDGEDSEKLSPLIDVAAERFNTGL
ELEDPEKIDFKIKAKQFVKIYGQMAAIMPFEVEAWEKLFWFLKFLVPKLNIKDPNQDALDDLLKAVDLSSYGLERTKLNQ
TIGLDTSEAELDPQNPTPRGYREGEVQEDPLEEIIRSFNERWFQGWSATPEEQRIKFLNIVESVQAHPDFEKKFDENSDP
YSRNLAFEKIMKEVMLKRRKEELELYKLHNQDEAFRSALYLSVKEALTQSLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1765 NP_231400.1 type I restriction enzyme HsdR Not tested VPI-2 Protein 0.0 71
VC0395_A1363 YP_001217306.1 type I restriction enzyme HsdR Not tested VPI-2 Protein 0.0 71
VPI2_0013c ACA01830.1 type I restriction enzyme HsdR Not tested VPI-2 Protein 0.0 71
SAS0025 YP_042158.1 type I restriction enzyme protein Not tested SCC476 Protein 3e-113 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA32_43180 YP_005500484.1 type I/III endonuclease restriction R subunit VFG1098 Protein 0.0 71