Gene Information

Name : ydfA (BMWSH_3475)
Accession : YP_005495666.1
Strain : Bacillus megaterium WSH-002
Genome accession: NC_017138
Putative virulence/resistance : Resistance
Product : Na+/H+ antiporter NhaD arsenite permease-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3260699 - 3261997 bp
Length : 1299 bp
Strand : +
Note : -

DNA sequence : 
GTGGTATCAGTTATAGTAGCCTCCCTCATCTTCTTAGTGACATTGATTTTTGTCATTTGGCAGCCAAAGAACTTGTCTAT
TGGTTGGTCAGCGTGTGGAGGCGCAGTAATAGCTCTTTTAGCAGGTGTGGTTGATTTCCATGACGTGCTAGATGTAACTC
AAATTGTATGGAACGCAACGTTAACGTTTATTGCAGTTATTATTATTTCTTTAATTTTAGATGAAATTGGATTTTTTGAG
TGGGCAGCGTTACATATGGCACGAGCTGCAGGAGGTAATGGCGTTCGCATGTTTGTATATGTATCCCTCCTAGGAGCTGT
AGTAGCCGCATTATTCGCTAATGATGGGGCAGCCTTAATTCTAACACCTATCGTACTTGCTATGGTGCGAGCACTTAAAT
TTGAAGATAAAATGGTCTTTCCTTTTATTATCGCCAGTGGATTCATTGCGGATACAACATCATTACCTCTTGTGGTAAGT
AACTTGGTCAATATTGTATCAGCGGATTTCTTTGGGATTCGCTTTTCTGAATTTGCCTCACGCATGATTGTGCCAGATTT
ATTTTCACTTTTGGCAAGTATTGCTGTCTTGTATTTGTATTTTCGCAAAAGCATCCCTAAGAAATACAATCTAGATGATT
TACAGAAACCGGTTGAGGCCATCAAAGATGAGAAAATGTTTCGTTTATCAGGAATTGTTTTATTCATTTTAGTTCTTGGT
TACTTTATTGGTGAGTTTTTCGATATTCCCGTTTCTATTATTGCAGGAATTATCGCCATTTTATTCTTAGGAATAGCAAG
GAAAAGCCCAGCTGTTCACACGAAAAAAGTGTTAGCAGGAGCTCCATGGGCAATTGTTTTCTTTTCCATTGGTATGTATG
TTGTTGTGTATGGATTACGCAATGTGGGGCTAACTGAAGTACTAGCAAGCCTTATTCAAACAACCGCTGATCAAGGATTA
TTTGCAGCAACTATTGGCATGGGATTCATTGCAGCCATTCTTTCATCGATTATGAACAACATGCCAACCGTGATGATTGA
TGCTTTGGCCATTGATGCAACTTCTGCAACAGGTACAATTAAAGAAGCTCTGATTTATGCAAATGTCATTGGTTCGGACT
TAGGACCAAAAATTACACCTATTGGCTCTCTAGCAACTCTCTTATGGCTCCACGTTCTTTCGACAAAAGGAGTTAAGATT
TCTTGGGGAACCTATTTTAAAACAGGTATCATCTTAACCATCCCAACATTGTTTATTACGCTTGTTGGTTTATATATTTG
GTTATCAATTATTTCTTAA

Protein sequence : 
MVSVIVASLIFLVTLIFVIWQPKNLSIGWSACGGAVIALLAGVVDFHDVLDVTQIVWNATLTFIAVIIISLILDEIGFFE
WAALHMARAAGGNGVRMFVYVSLLGAVVAALFANDGAALILTPIVLAMVRALKFEDKMVFPFIIASGFIADTTSLPLVVS
NLVNIVSADFFGIRFSEFASRMIVPDLFSLLASIAVLYLYFRKSIPKKYNLDDLQKPVEAIKDEKMFRLSGIVLFILVLG
YFIGEFFDIPVSIIAGIIAILFLGIARKSPAVHTKKVLAGAPWAIVFFSIGMYVVVYGLRNVGLTEVLASLIQTTADQGL
FAATIGMGFIAAILSSIMNNMPTVMIDALAIDATSATGTIKEALIYANVIGSDLGPKITPIGSLATLLWLHVLSTKGVKI
SWGTYFKTGIILTIPTLFITLVGLYIWLSIIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-128 71
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 7e-126 70
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 4e-126 70
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 3e-107 61

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0575 Protein 6e-129 71
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0574 Protein 6e-128 71
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0576 Protein 3e-107 61
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0578 Protein 1e-106 61
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0577 Protein 6e-105 60
ydfA YP_005495666.1 Na+/H+ antiporter NhaD arsenite permease-like protein BAC0031 Protein 1e-103 60