Gene Information

Name : APA12_40970 (APA12_40970)
Accession : YP_005492110.1
Strain :
Genome accession: NC_017136
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 109566 - 110456 bp
Length : 891 bp
Strand : -
Note : Integrase core domain

DNA sequence : 
ATGACACGCTTCATTGAGGAGCACCGGCAGACATATGGTGTCGGGTCAATCTGCAGGGTTCTGTCGATTGCACCATCTGC
CTATTATGCAACTGTTGCCAGACAGAAAAATCCGTGTGTGCGCAGCCAGAAAGACAAAGAACTGTGCGATGACATCCGTA
GAGTGTGGAATAATAATTTCTGCGTCTATGGAGCGCGCAAGGTCTGGCATCAGCTCAAACGTGAAGGCGTGGATGTCGCC
CGCTGCACGGTAGAGCGGCTGATGCGCCGGATGGGGCTGAAAGGCGTCATTCGTGGCAAGGGGGTCAGAACCACACGGCC
TGATCCGCAACGTCCGTGTCCGCAGGATCTGGTGCAGCGCCAGTTTCATGCTCCTGCCCCCAACAGACTGTGGGTTTCGG
ATTTCACGTATGTTTCCACTTGGCAGGGCTTTGTTTATGTGGCCTTCATCATTGACGTCTTTGCACGGGTTATTGTGGGT
TGGCGTGTCTCCTCAACGGCTCATACCGACTTCGTACTGGATGCCCTTGAGCAGGCTCTGTGCCAGAGGCAGCCTGAGGG
AAAAGTGCCCCACCATTCCGACCGCGGCTGTCAATATGTGTCCATTCGCTACACGCAAAGACTGGCTGAAGCGGGGCTCG
TTGCTTCTGTCGGCAGTGTTGGGGATTCCTATGATAACGCCTTGGCAGAGACCATTAACGGACTTTACAAAACCGAACTC
ATCTATCGGCAGGGGCCATGGAAAAACAGGGAAGCTGTTGAACTGGCAACACTTAAATGGGTCGACTGGTTCAATAATCG
GCGGCTCCTGTCCTCCATTGGAAACATCCCGCCAGCAGAAGCTGAGGCACGCTTTTATGCACAACAGAAATCACATGCAT
TAGCCGCTTAA

Protein sequence : 
MTRFIEEHRQTYGVGSICRVLSIAPSAYYATVARQKNPCVRSQKDKELCDDIRRVWNNNFCVYGARKVWHQLKREGVDVA
RCTVERLMRRMGLKGVIRGKGVRTTRPDPQRPCPQDLVQRQFHAPAPNRLWVSDFTYVSTWQGFVYVAFIIDVFARVIVG
WRVSSTAHTDFVLDALEQALCQRQPEGKVPHHSDRGCQYVSIRYTQRLAEAGLVASVGSVGDSYDNALAETINGLYKTEL
IYRQGPWKNREAVELATLKWVDWFNNRRLLSSIGNIPPAEAEARFYAQQKSHALAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-62 68
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-59 67
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 1e-62 67
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-70 67
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-79 62
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-77 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-78 61
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-78 61
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-78 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 7e-76 61
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-76 61
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 9e-76 61
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 9e-76 61
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 9e-76 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-78 61
Z1198 NP_286733.1 transposase Not tested TAI Protein 6e-77 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-78 61
Z1638 NP_287141.1 transposase Not tested TAI Protein 6e-77 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-77 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-77 61
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-53 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-73 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-59 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-45 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA12_40970 YP_005492110.1 transposase VFG1602 Protein 1e-73 59