Gene Information

Name : APA22_42910 (APA22_42910)
Accession : YP_005491290.1
Strain :
Genome accession: NC_017126
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 108039 - 108491 bp
Length : 453 bp
Strand : +
Note : Probably pseudogene, C-terminal domain of a gene truncated by transposon

DNA sequence :
GTGGCCTTCATCATTGATGTATTCGCACGGGTTATTGTGGGCTGGCGCGTCTCCTCAACGGCCCATACCGACTTCGTGCT
GGATGCTCTCGAGCAGGCTCTGTGCCAGAGGCGACCTGAGGGAAAAGTGACCCACCATTCCGACCGCGGCTGTCAATATG
TGTCCATTCGCTACACGCAAAGACTGGCTGAAGCGGGGCTCGTTGCTTCTGTCGGCAGTGTTGGGGATTCCTATGATAAC
GCCTTGGCAGAGACCATTAACGGACTTTACAAAACCGAACTCATCTATCGGCAGGGGCCATGGAAAAACAGGGAAGCTGT
TGAACTGGCAACACTTAAATGGGTCGACTGGTTCAATAATCGGCGGCTCCTGTCCTCCATTGGAAACATCCCGCCAGCAG
AAGCTGAGGCACGCTTTTATGCACAACAGAAATCACATGCATTAGCCGCTTAA

Protein sequence :
MAFIIDVFARVIVGWRVSSTAHTDFVLDALEQALCQRRPEGKVTHHSDRGCQYVSIRYTQRLAEAGLVASVGSVGDSYDN
ALAETINGLYKTELIYRQGPWKNREAVELATLKWVDWFNNRRLLSSIGNIPPAEAEARFYAQQKSHALAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 4e-43 70
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 2e-40 66
unnamed AAT48693.1 unknown Not tested PAI I 4787 Protein 2e-33 65
r15 AAC61720.1 putative transposase R15 Not tested PAI I CFT073 Protein 1e-33 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA22_42910 YP_005491290.1 transposase VFG1715 Protein 5e-41 66