Gene Information

Name : APA12_08390 (APA12_08390)
Accession : YP_005480599.1
Strain : Acetobacter pasteurianus IFO 3283
Genome accession: NC_017108
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 876931 - 878541 bp
Length : 1611 bp
Strand : +
Note : IS66

DNA sequence :
ATGACGCATGCGCCCGCGGTCCTGCCTGATGATCCGGATATCCTGAGGGAAATGATTGTTTCCCTGCAGACTGAAGTGGC
TCGGCTTTCCGCTTCAGCCCGTGCGTATGAAGCTCTTGTCCAGTCTCTCAAAATCCGGATCGCACGTCTTCAGAAACAGA
AATTCGGGGCCAGTTCAGAAAAGATAGACCGTGAGATTGAACAACTCGAACTGCTTCTTGAAGATGTGAAAATCGCCATC
GCGGCAGCCGATCCTTCTCCTGACATCAGGGAGCACGATGACAGCGATGGTGTGGTCTCTTCCCCCAGACGGCGCGGCAA
ACCAAAGGTTTCCGACACGACACCACGGGAGCGTATTGTTCTCGACCCGGGCGAGGCCTGTCCCGCCTGTGGCGGTCCCC
TACGCCTCGTTGGCGAAGATGTCACCGAAATACTGGACTTTATTGCGGCAAAACTGAAAGTTGTCGAAACGGCACGGCTG
AAGAAATCCTGCCGTCATTGCGAAACAATGGTACAGCCTGAAGCACCGTCGCGCCCTGTCCCACGGGGCATGGCTGGCCC
CGGGCTGCTGGCCCATATCCTGGTCTCAAAATTCGATGATCACATTCCGCTTTATCGTCAGAATGAGATCTTTTCCCGTC
AGGGTGTGGACATTCCCCGTTCAACCCTGATCGACTGGTGTGGTCAGGCCGTTGCCGTTCTGCGTCCTCTCACAGATCTG
ATCCGTCAGGATGTCGTAAAGGCAGACCTGCTGCATGCCGATGATACACCCATCCAGGTTCTTGATCCTCGCCTGCGTCA
GGCTGGGAAACCACGTGGTGTGAAGGAAGGGCGGATCTGGACCTATCTGCGCGATCCCCGCCCCTGGGGCGGGAGTGATC
CGCCCGCCGTGGCCTACTGGTTCTCTCCCGATCGCAAGGGGATCAATCCCCAGACCCATCTGGCACAGTTCCGGGGCATT
CTGCAGGCTGACGCCTACGCGGGGTTCAGGGATCTGTATAAACCCGATGCAACGGGAACCGTGCATGTGCGCGAAGCGGC
CTGCTGGGCTCATCTCCGCAGGGCCTTCCATGATGTCTGGAAGGGCAGTGATTCGACAATCGCAAGGGAAGCACTCGAGC
AGATCGGGGAACTCTACGATATCGAGCGGCAGCTCACCGGGTCTCCTGCTCCGTATCGTCTGGCTGTCCGACAGGAAAAA
AGCCGCCCTCGTGTCACAGCATTCCACGCATGGTGCGAAACACAGCTCGCCCGTATCCCAGGCAAGGGGGAACTGGCAAA
AGCAATCCGTTATGCGCTCAACCGGTGGGCAGCCTTTACCATCTTCCTCGAAGATGGTCGTGTTGCCATCGACAACAATC
CTGCCGAACGGGCCATACGACCGGTATGCGTCGGGCGGAAAAACTATCTGTTTGCCGGTTCAGACGCCGGGGGCGACAAC
ATCGCTGATGCCATGACGCTTATCGAAAGCGCAAAACTCTCAGGCATCAACCCGCACGATTACCTCGCCGACGTCCTGGC
CCGTATCAACGAGCACAAGATCAATCGGCTCCACGAACTGTTGCCATGGAACTGGAAACCCGCGAATATACCGCATAGGC
AGGCCGCATAA

Protein sequence :
MTHAPAVLPDDPDILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLLEDVKIAI
AAADPSPDIREHDDSDGVVSSPRRRGKPKVSDTTPRERIVLDPGEACPACGGPLRLVGEDVTEILDFIAAKLKVVETARL
KKSCRHCETMVQPEAPSRPVPRGMAGPGLLAHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDL
IRQDVVKADLLHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINPQTHLAQFRGI
LQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIAREALEQIGELYDIERQLTGSPAPYRLAVRQEK
SRPRVTAFHAWCETQLARIPGKGELAKAIRYALNRWAAFTIFLEDGRVAIDNNPAERAIRPVCVGRKNYLFAGSDAGGDN
IADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPWNWKPANIPHRQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-92 45
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-93 44
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 4e-96 43
unnamed AAC31494.1 L0015 Not tested LEE Protein 4e-96 43
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 5e-96 43
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 5e-96 43
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 2e-96 43
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 3e-96 43
tnp AEA34686.1 transposase Not tested Not named Protein 2e-96 43
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-99 43
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-96 43
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 1e-95 43
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 4e-93 43
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 4e-93 43
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 3e-95 42
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 3e-95 42
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 1e-83 41
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
APA12_08390 YP_005480599.1 transposase VFG0793 Protein 2e-96 43
APA12_08390 YP_005480599.1 transposase VFG1736 Protein 1e-79 43
APA12_08390 YP_005480599.1 transposase VFG1051 Protein 2e-70 41