Gene Information

Name : Spiaf_0610 (Spiaf_0610)
Accession : YP_005474417.1
Strain : Spirochaeta africana DSM 8902
Genome accession: NC_017098
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 705909 - 706814 bp
Length : 906 bp
Strand : -
Note : PFAM: ABC 3 transport family

DNA sequence : 
ATGAGCATTTTTGAAAACCTGGTCCGCGCGATCACCGCTGTCCTGATGTTTGGCATCCAGCTGCTGCCGGAGGCAGTATC
CGGGCCGTTCCAGTACAACTTTATGCAGCGAGCCCTGGTTACCGCGCTGATAGTCGGTACTATGTGCGGGGTGTTGTCCT
GCTATGTCGTGCTCAAACGATGGGCGCTGCTGGGTGATGCTATCAGCCATGCCGTTTTGCCTGGTGTAGCGATTGCGTAT
CTGCTCGGCATCCCGCTGTTTTTCGGGGCCTTTGTCAGCGGGTCGGTTACCTCTATTGGCATCGGCTTTCTGCAGCGCAA
CTCCCGTATCAAGGAAGACTCGGCCATGGGGATCCTGTTTACCGCCGCATTTGCCCTGGGGATTGTACTCATATCCAGGA
TCGCTACCTCCACCCACCTTATGCACATCCTGTTCGGCAATGTGCTGGGAGTAAACCTGCAACAGGCTGCCGGAACTCTG
GCTGCCGGTCTGCTGGCGCTGGCCTGTGTGGCAGTCTTTTACAAGCCGCTGCTGCTGTACTGCTTTGATCCCGTCCATGC
CAGCGCTATCGGGATGCCGACAGCAACAATCCACTACGGGCTGATGCTGCTGTTAACCCTGACTATTGTCACCAGCCTGG
AAACGGTCGGGGTTATCCTGGTGGTGGCCATGCTGATTATCCCCGGTGCGGCGGCGTCGATGCTGACCCACCGCCTGCCG
GTGATGATGGCGCTGGCCGCACTGATTGGTGCCGGCTCCTCGGCTGCCGGGATCTACTTTTCGTTTATCCTGAACGTCGC
CTCGGGCGGCAGCATCGTGCTGGTGGCCTTCCTGGTGTTCGCCATAATCGCGGTACTGGCCCCGGAGGGGCCGCTGCGCG
GCCGCCGCCTCCATCATCCGGGCTGA

Protein sequence : 
MSIFENLVRAITAVLMFGIQLLPEAVSGPFQYNFMQRALVTALIVGTMCGVLSCYVVLKRWALLGDAISHAVLPGVAIAY
LLGIPLFFGAFVSGSVTSIGIGFLQRNSRIKEDSAMGILFTAAFALGIVLISRIATSTHLMHILFGNVLGVNLQQAAGTL
AAGLLALACVAVFYKPLLLYCFDPVHASAIGMPTATIHYGLMLLLTLTIVTSLETVGVILVVAMLIIPGAAASMLTHRLP
VMMALAALIGAGSSAAGIYFSFILNVASGGSIVLVAFLVFAIIAVLAPEGPLRGRRLHHPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-45 46
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-45 46
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-44 45
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-44 45
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-45 45
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-45 45
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-45 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spiaf_0610 YP_005474417.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 8e-56 49
Spiaf_0610 YP_005474417.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 3e-45 46
Spiaf_0610 YP_005474417.1 Mn2+/Zn2+ ABC transporter permease BAC0441 Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spiaf_0610 YP_005474417.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 3e-45 46