Gene Information

Name : LFE_0818 (LFE_0818)
Accession : YP_005468659.1
Strain : Leptospirillum ferrooxidans C2-3
Genome accession: NC_017094
Putative virulence/resistance : Resistance
Product : arsenical membrane pump protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 805985 - 807298 bp
Length : 1314 bp
Strand : -
Note : -

DNA sequence : 
TTGATCACCGCAATCCTCATTTTTGTATTGACCCTGATTTTTGTCTTATGGCAGCCCCGTGGACTCGGCATTGGATGGAG
TGCTCTTGCCGGAGCAGCATTCGCTCTTCTTTTTGGAGTTGTCCATACCCAGGACATTTCCGCTGTTTGGTCAATCATCT
GGGATCCCACGATGACTTTTATCGGTCTAATCGTCATCTCTCTGCTCCTTGATGAAGCAGGTTTTTTTGCCTGGTGCGCC
ATCCATGTTGCTCTATGGGGAAAAGGCAATGGAACAAAATTATTCCTGCTGATCATTTTGCTGGGAGCGAGCGTTTCCGC
TATCTTTGCAAATGACGGAACAGCACTGATCCTGACGCCCATTGTTCTTTCCGTTCTTTTGTCACTGGGTTTTTCCCCAA
AAAATGCCTTGGCCTTCATTCTTGCAACAGGATTTGTGGCTGATTCAACAAGCTTGCCTTTGGTGATATCAAACCTTGTA
AATATCTTGTCTGCCGATTACTTTCATAAGAGCTTTGGTGAATATGCAAAAGTCATGGTCCCTGTCAACTTTGCCGCATT
AGGATCAACTCTTCTGATTTCATGGATCTATTTCAAAAGATCTCTCCCTGCAAGTTATAACCTGATGGGGCTCCCCCCTC
CAATAACCAAAATCCACGACAGACTGGTCTTTTTGGCAACCTTTCCACTACTGATCCTTTTATTGGCTGCATATTTCATG
ACTGCAGGCACAAAAATACCTGTTTCGCTTGTAACTGGTGCAGGAGCCATACTCTGGCTCGCAATTGCAGGTCGATGGTG
GAAGAAAGGAAAAGGTGCAGTTATTCCTGTTTGGAAAGTCTTAAGGGAAGCTCCCTGGCAAATTGTTCTATTCAGCCTGG
GGATGTATCTTGTTGTCTACGGCTTAAAGAATCAGGGACTTACGATGGAAGTTGGCCACCTTCTGACCTCCATGTCAAAT
ATGGGAAGCTTTGCAGCAACGATTGGGAGCGGATTCATGTTTGCGTTTCTATCTGCAGCCATGAATAACCTGCCGACAGT
TTTAATTGGAGCGATCGGGATCCATCAGGCACTTCACCTGTCCCCTCTCGTCAAAGAGAGCATGATCTATGCAAATATTA
TCGGATGTGACCTTGGACCGAAAATGACCCCCATCGGAAGTCTGGCAACACTTTTATGGCTTCATGTATTGGAAAAAAAA
GGAGAGAAGATCTCCACCGGAGAGTATATCCGGGCGGGATTCATCCTAACCATTCCGGTCCTTTTCATGACGCTCGTCGC
CCTTTATGGGTGGCTTCGCTTTCTCCATTCGTGA

Protein sequence : 
MITAILIFVLTLIFVLWQPRGLGIGWSALAGAAFALLFGVVHTQDISAVWSIIWDPTMTFIGLIVISLLLDEAGFFAWCA
IHVALWGKGNGTKLFLLIILLGASVSAIFANDGTALILTPIVLSVLLSLGFSPKNALAFILATGFVADSTSLPLVISNLV
NILSADYFHKSFGEYAKVMVPVNFAALGSTLLISWIYFKRSLPASYNLMGLPPPITKIHDRLVFLATFPLLILLLAAYFM
TAGTKIPVSLVTGAGAILWLAIAGRWWKKGKGAVIPVWKVLREAPWQIVLFSLGMYLVVYGLKNQGLTMEVGHLLTSMSN
MGSFAATIGSGFMFAFLSAAMNNLPTVLIGAIGIHQALHLSPLVKESMIYANIIGCDLGPKMTPIGSLATLLWLHVLEKK
GEKISTGEYIRAGFILTIPVLFMTLVALYGWLRFLHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 2e-93 57
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 1e-87 52
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 7e-84 51
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-83 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0577 Protein 5e-93 57
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0576 Protein 1e-92 56
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0578 Protein 4e-93 56
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0031 Protein 4e-94 56
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0575 Protein 3e-85 52
LFE_0818 YP_005468659.1 arsenical membrane pump protein BAC0574 Protein 6e-85 52