Gene Information

Name : LFE_2227 (LFE_2227)
Accession : YP_005470030.1
Strain : Leptospirillum ferrooxidans C2-3
Genome accession: NC_017094
Putative virulence/resistance : Virulence
Product : UDP-glucose 4-epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2279537 - 2280481 bp
Length : 945 bp
Strand : +
Note : -

DNA sequence : 
ATGGCCGGAAACACCATGCTCATTACCGGAGGCGCTGGCTTCATCGGCTCGAATATCGCCAGAAAACTTCTCGCCGAAGG
AAAAACCGTCGCCATTCTTGATAACCTCGCAACAGGAAAGCGCGAGAATATCGACGACATCAAGGCTCATGTCCGTTTCA
TCGAAGGGGATGTCAGGGATCGGGACCTTCTGAAAAAGATCCTTCCCGATGTCGAGGTGATCTTTCATCAGGCGGCGCTC
GGATCGGTTCCCCGCTCCATCAAGGATCCCTTCGAAACCCAGTCCGCCAATGTCGATGGAACCATGGCCATCCTGTGGGA
AGCCAAACATGCGGGCGTCAGGAGAGTGACCATTGCCGGTTCGTCTTCTGTCTACGGGGATGCGCCGGGGATGCCCAGGG
TCGAGACGATTGTGCCGTCCCCGCTTTCGCCCTATGCGTTGACCAAGATGAGTCAGGAGCATCTCGGCGCCATTTTTTCA
AAAACTTATGGGCTTGAATGTGTGACGCTCCGGTATTTCAATATTTTCGGACCCTTTCAGGATCCCCAGTCGGAATACGC
GGCGGTGATTCCCCGTTTCATTACCAAGATCATCAAAAATGAACCGATCACGATCTACGGCGACGGACTCCAGTCCCGGG
ACTTTACCTTCATCGACAATGTCGTGTCGGCGAACTTGCTCGCAGCCCGGACAAAAACCGGGATCGGACAGGCCGCAAAT
ATCGGCTGTGGCGCGCAATTCACCCTTCTGGACCTTGTCGAAGAGTTGAAAAAGCTGCTGGGCAAACCGAATGTGGCCAT
TGATTTTCAGCCACCGAGGGCCGGTGATCCGAGAGAGTCGAGAGCCGATATCAAAAAAGCGGAAGAGCTTCTGGGCTATC
GCCCGCTTGTGGATTTTTCCGAAGGACTAAAACGCACCGTTGAATGGTTCAAGGCCAGAACATAG

Protein sequence : 
MAGNTMLITGGAGFIGSNIARKLLAEGKTVAILDNLATGKRENIDDIKAHVRFIEGDVRDRDLLKKILPDVEVIFHQAAL
GSVPRSIKDPFETQSANVDGTMAILWEAKHAGVRRVTIAGSSSVYGDAPGMPRVETIVPSPLSPYALTKMSQEHLGAIFS
KTYGLECVTLRYFNIFGPFQDPQSEYAAVIPRFITKIIKNEPITIYGDGLQSRDFTFIDNVVSANLLAARTKTGIGQAAN
IGCGAQFTLLDLVEELKKLLGKPNVAIDFQPPRAGDPRESRADIKKAEELLGYRPLVDFSEGLKRTVEWFKART

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-48 42
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LFE_2227 YP_005470030.1 UDP-glucose 4-epimerase VFG0430 Protein 8e-49 42