Gene Information

Name : LFE_1572 (LFE_1572)
Accession : YP_005469384.1
Strain : Leptospirillum ferrooxidans C2-3
Genome accession: NC_017094
Putative virulence/resistance : Unknown
Product : IstB-like ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1588659 - 1589471 bp
Length : 813 bp
Strand : +
Note : -

DNA sequence :
ATGACTGACCTCCACCAGCGGATCACTCAGCAACTCCGGACCCTGAGTTTAAAGGGACTGATCGACCTTTACCGCCCTCT
GGCCGAAGAAGCGGCCAAGAACCAGCTCCAGTACGAGGAATACCTGGCTCTTCTTCTGGATGAAGAAACCCGGGGAAAGA
CCGACCGGTCGGTCCGCACCAAAATAACTCTGGCCCGGTTCCCTTTCCTCCGCACCCTGGAGGAGTTCGACTTTTCTTTC
CAGCCCTCCCTGGAGGAAAAAACCTTGGTCCGCTTGGGAACGCTCGACTTTCTGGAGAAGGCCGAGAATCTTGTTTTCCT
TGGACCGCCTGGCGTCGGGAAAACACATCTGGCCGTGGCGATCGGCATCAAGGCCTGCCAAGCCAAAAAGCGCGTTCTGT
TCCTCACCCTCCCCGCTCTCTTGCGGGATCTGTCTCTGTCGGTCCGGAACGGCACCCTGCCGGCGAGCCTCCTGGCATAT
TCCCGGTACCATGTCCTGATCATCGACGAGGTCGGATACACCCCGATTACCCGGGAAGAGGCCAACCTGCTCTTTCAGCT
GGTCTCCATCCGTTACGAGAAAGGATCGATCCTTCTGACCAGCAACTACGGGTTCGAAGACTGGGGAAAGATCTTTCCTG
ACTCTGTCGTGGCGGCGGCCATTATTGACCGGCTGGTTCATCATGCCCGGATTTTCCCTATCCAGGGATCGAGCTATCGT
GTCCGGGACAAAATCCATCGGCGAAAGAGCGCAAAACCATCCCCATCTTCGCTTATCTCGCAAGGGGAAGGAGAAATCAA
AGCCTCACTTTAA

Protein sequence :
MTDLHQRITQQLRTLSLKGLIDLYRPLAEEAAKNQLQYEEYLALLLDEETRGKTDRSVRTKITLARFPFLRTLEEFDFSF
QPSLEEKTLVRLGTLDFLEKAENLVFLGPPGVGKTHLAVAIGIKACQAKKRVLFLTLPALLRDLSLSVRNGTLPASLLAY
SRYHVLIIDEVGYTPITREEANLLFQLVSIRYEKGSILLTSNYGFEDWGKIFPDSVVAAAIIDRLVHHARIFPIQGSSYR
VRDKIHRRKSAKPSPSSLISQGEGEIKASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 4e-36 41
unnamed CAA21402.1 - Not tested HPI Protein 5e-36 41
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 4e-36 41
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 4e-36 41
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 4e-36 41
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 4e-36 41
api84 CAF28558.1 putative transposase Not tested YAPI Protein 4e-36 41
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 5e-36 41
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 5e-36 41
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 5e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LFE_1572 YP_005469384.1 IstB-like ATP-binding protein VFG1606 Protein 2e-36 41
LFE_1572 YP_005469384.1 IstB-like ATP-binding protein VFG1515 Protein 2e-36 41
LFE_1572 YP_005469384.1 IstB-like ATP-binding protein VFG1627 Protein 2e-36 41