Gene Information

Name : AMIS_52940 (AMIS_52940)
Accession : YP_005465030.1
Strain : Actinoplanes missouriensis 431
Genome accession: NC_017093
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5623366 - 5624175 bp
Length : 810 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTCGCCTCAGCGGTACCGGAATGACTCTGGCCTACGACAAGCGAGTCATCGCCGAGCAGCTGAGCGTCGACATCCC
GGACGACTCGTTCACCGTGATCATCGGCCCGAACGCGTGCGGCAAGTCCACGCTGCTGCGGGCCCTCGCGCGGCTGCTCA
AGCCGGCCGCCGGGACCGTGCTGCTGGACGGGCAGGACCTGCAGTCCCAGCCCACCCGCCAGGTCGCCAAGACGCTCGGC
CTGCTGCCGCAGTCGTCGACCGCGCCGGACGGCATCACCGTCTCCGAGCTGGTGGCCCGCGGCCGGTACCCGCACCAGAG
CCTGCTGCGCCGCTGGTCGACCGCGGACGAGCAGGTGGTGACCGAGTCGATGACCGCGACCGGGGTCGCCGACCTGGCCG
ACCGCAACGTCGACGAGCTCTCCGGCGGCCAGCGCCAGCGGGTCTGGCTCGCCATGGCGCTCGCCCAGCAGACGCCGCTG
CTGCTGCTCGACGAGCCGACCACGTACCTGGACATCGCGCACCAGATCGAGGTGCTCGACCTCTGCGCCGAGCTGCACGA
GACCCAGGGCCGGACCCTGGTGGCGGTGCTGCACGACCTGAACCACGCCGCCCGGTACGCCACCCACCTGATCGCCATGC
GGGGCGGCAAGGTCGCGAAGTCCGGCAGTCCCGCCGACGTGCTCACCGCGGATCTGGTCGAGGAGGTCTTCGGCCTGCCC
TGCCGGGTGATCGACGACCCGGAGACCGGCACCCCGCTGGTGGTCCCGGCCGCCCGTCGCCGGTTGGCCTCAACATCGGA
ATCTGTCTGA

Protein sequence : 
MSRLSGTGMTLAYDKRVIAEQLSVDIPDDSFTVIIGPNACGKSTLLRALARLLKPAAGTVLLDGQDLQSQPTRQVAKTLG
LLPQSSTAPDGITVSELVARGRYPHQSLLRRWSTADEQVVTESMTATGVADLADRNVDELSGGQRQRVWLAMALAQQTPL
LLLDEPTTYLDIAHQIEVLDLCAELHETQGRTLVAVLHDLNHAARYATHLIAMRGGKVAKSGSPADVLTADLVEEVFGLP
CRVIDDPETGTPLVVPAARRRLASTSESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-63 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-63 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-63 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-63 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-58 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-47 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-59 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-59 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-50 43
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 2e-24 42
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 8e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMIS_52940 YP_005465030.1 putative ABC transporter ATP-binding protein BAC0164 Protein 5e-47 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMIS_52940 YP_005465030.1 putative ABC transporter ATP-binding protein VFG0925 Protein 3e-74 59
AMIS_52940 YP_005465030.1 putative ABC transporter ATP-binding protein VFG1042 Protein 4e-47 47