Gene Information

Name : PSMK_30940 (PSMK_30940)
Accession : YP_005447150.1
Strain : Phycisphaera mikurensis NBRC 102666
Genome accession: NC_017080
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3669255 - 3670118 bp
Length : 864 bp
Strand : +
Note : -

DNA sequence :
TTGAGCGTCGCGTACCTGCTCGAACCGTTCCAGTACGGCTTCATGAAGGAAGCCATGCTCATGGCCGCGCTCATCGGCGC
GACCTGCGCCCTGCTCAGCTGCTACCTGGTGCTCAAGGGCTGGTCGCTGATGGGCGACGCGGTCAGCCACGCCGTGCTGC
CGGGCATCGTGCTCGCGTACGTCGTCGGCCTCCCGCTGGGCGTCGGGGCCTTCTTCGCCGGCGTGCTGTGCGCCGGGAGC
ACCGGCTGGATCAAGAACCACAGCCGCGTCAAGGAAGACACCGTGATGGGCGTCGTCTTCACCGGGCTCTTCGCGCTGGG
CCTGGTGATGTACTCCAAGATCCAGAGCGACATCCACCTGAACCACGTCCTCTTCGGCAGCCTGCTGGGCATCGAGACCG
GCGACATGATCCAGGCCGTCGTCGCGTCGGGCCTGACGCTCGCCGCGGTCGCCATCTTCCGCAAAGACCTTCTGCTGTAC
CTCTTCGACGCGAATCAGGCCCGGGCCGTGGGCCTGAACCCGACCTTCCTGCACTACCTGTTGCTGTCGATCCTCTCGCT
GACGATCGTCGCCTCGCTGCAGGCCGTGGGCATCATCCTCACCGTCGCGATGCTCATCGTGCCCGGTTGCATCGGCCAGC
TGCTCGCCGACCGCTTCGGCCGGATGCTCGGGATCGCCTCGGCCGCCGCGGTTTTCTCCGCCGTCGCGGGGACGTACGCC
AGCTACTTCCTCAACGGCGAGACGGGCGCCTGCATCGTGCTGGTGCAGGCGCTGATCCTCCTGCTCGCGGTCTTGTTCGC
CCCCAAGCACGGCGTGCTCTCCCGCGCCCGCACCACACGCCGGGCGACCGCGTCGGCGGCCTGA

Protein sequence :
MSVAYLLEPFQYGFMKEAMLMAALIGATCALLSCYLVLKGWSLMGDAVSHAVLPGIVLAYVVGLPLGVGAFFAGVLCAGS
TGWIKNHSRVKEDTVMGVVFTGLFALGLVMYSKIQSDIHLNHVLFGSLLGIETGDMIQAVVASGLTLAAVAIFRKDLLLY
LFDANQARAVGLNPTFLHYLLLSILSLTIVASLQAVGIILTVAMLIVPGCIGQLLADRFGRMLGIASAAAVFSAVAGTYA
SYFLNGETGACIVLVQALILLLAVLFAPKHGVLSRARTTRRATASAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-56 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-56 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-56 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-56 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-56 54
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-43 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-43 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-43 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-43 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-43 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein BAC0442 Protein 3e-54 57
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein BAC0352 Protein 3e-56 54
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein BAC0441 Protein 4e-43 44
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein BAC0351 Protein 3e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein VFG0528 Protein 3e-56 54
PSMK_30940 YP_005447150.1 iron ABC transporter permease protein VFG0527 Protein 3e-43 42