Gene Information

Name : PSMK_30930 (PSMK_30930)
Accession : YP_005447149.1
Strain : Phycisphaera mikurensis NBRC 102666
Genome accession: NC_017080
Putative virulence/resistance : Virulence
Product : iron ABC transporter permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3668344 - 3669258 bp
Length : 915 bp
Strand : +
Note : -

DNA sequence :
ATGATCGAGCCGCTCCTCGTGCCGTTTCAGTACGACTACATGGTCAGGGCGATGCTCGTCAGCGGCGTCATCGGGCTCGT
CTGCGGCCTGCTGTCCTGCTTCGTCACGCTCAAGGGCTGGTCGCTCATGGGCGACGCGCTCGCGCACGCGATCGTCCCGG
GCGTGGCGATCACCTACTTCGCGGGGCTGCCGTTCGCGCTGGGCGCTTTCGTGAGCGGGCTGCTCGCGGCGATGGTGATG
GCGCTCGTGAAGAGCCGCACGCCGATCCGCGAGGACGCGGTCATCGGCATCGTCTTCACGACCTTCTTCGCCGCCGGCGT
GCTGCTGATCTCGGTCTTCCCCAGCAACATCAGCCTGAAGACGATCGTCTTCGGCAACATCCTGGGCATCGCCGACGGCG
ACGTCGTGCAGATGCTGCTCATCTCCGCCGTGACGCTCGCGGTGATCGGGCTGAAGTGGAAGGACCTGCTGCTGTTCTGC
TTCGACCCGAACCAGGCGAGAGCGATCGGCTTGAACCCGGCAGTGCTGCACCTCACGCTGCTCACGCTGCTCGCGGGCAC
CGCGGTCGCGGCGCTGCAAGCGGTGGGCGCCTGCCTGGTCGTCGCGATGCTCGTGACACCCGGCGCGACCGCGTACCTGC
TCACCGACCGGTTCCCGCGGATGATGCTGCTCGCGTGCCTCACGGGCACGCTCACCAGCGTGGTGGGGGCGTATGCCAGC
TACTTCCTCAACGGCTCCACCGGCGGGTGCATCGTGTGCCTGCAGACGGCGGTCTTCCTGCTGGTTCTGTTTCTCGCCCC
CAAGCACGGCGTCCGCGCCGGCCGCCGCCGCGGGCGCGACACGGCCGACGCGCTCCTCGCCTCCGGCGACGCCGCGCCCG
TGCTGGCGACCACCTCGACCGCGGAGCGCGCTTGA

Protein sequence :
MIEPLLVPFQYDYMVRAMLVSGVIGLVCGLLSCFVTLKGWSLMGDALAHAIVPGVAITYFAGLPFALGAFVSGLLAAMVM
ALVKSRTPIREDAVIGIVFTTFFAAGVLLISVFPSNISLKTIVFGNILGIADGDVVQMLLISAVTLAVIGLKWKDLLLFC
FDPNQARAIGLNPAVLHLTLLTLLAGTAVAALQAVGACLVVAMLVTPGATAYLLTDRFPRMMLLACLTGTLTSVVGAYAS
YFLNGSTGGCIVCLQTAVFLLVLFLAPKHGVRAGRRRGRDTADALLASGDAAPVLATTSTAERA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-55 52
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-55 52
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-55 52
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-55 52
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-55 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-45 46
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-45 46
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-45 46
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-45 46
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-45 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein BAC0441 Protein 5e-58 56
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein BAC0351 Protein 1e-55 52
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein BAC0352 Protein 1e-45 46
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein BAC0442 Protein 6e-44 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein VFG0527 Protein 1e-55 52
PSMK_30930 YP_005447149.1 iron ABC transporter permease protein VFG0528 Protein 9e-46 46