Gene Information

Name : PSMK_30920 (PSMK_30920)
Accession : YP_005447148.1
Strain : Phycisphaera mikurensis NBRC 102666
Genome accession: NC_017080
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3667362 - 3668252 bp
Length : 891 bp
Strand : +
Note : -

DNA sequence :
GTGAACGGAGCCGGCCGCGGCGATCGACCGATCGGCCTCCGCGTGAGCGAGGTGACGGTGGCGTACAACAACGGCCACGT
CGCCCTGCACGACGCGAGCTTCGAGCTGGGGCCGGGCACGATCTGCGCGCTGGTGGGCGTGAACGGCAGCGGGAAGTCGA
CGCTCTTCAAGGCGATCATGGGCTTCGTGAAGCCCGCCCGCGGCGGCGTGACCATCGGCGAGCTCCCGGTGAAGCGGGCC
CACCGCGAGAACCTCGTGGCGTACGTGCCGCAGGCCGAGGACGTCGACTGGGACTTCCCGGTGAGCGTCTGGGACGTCGT
TCTGATGGGTCGCTACGGCTCGATGAACTTCCTGCGGATCCCGCGGCAGGCGGACAAGCGGATCGCCACCGAGTCGCTGG
AGCGCGTCGGCATGCTCGGCTTCAAGGACCGCCAGATCGGCGAGCTCTCCGGCGGGCAGAAGAAGCGCGTCTTCCTCGCC
CGGGCGCTGGCGCAGCGCGGCCGCATCCTGCTGCTCGACGAGCCGTTCACGGGGGTGGACGTGAAGACCGAGGCTTCCAT
CATCGAGCTGCTGCGGGAGCTGCGGGACGAGGGCCACCTCGTCCTGGTGAGCACGCACGACCTCGGCTCCATCCCCAGCT
TCTGCGACCGCGTGGTCATCATCAACCGCACCGTGCTCGCCGCCGGCCCCACGCACGCGACCTTCACGCAGGAGAACCTC
GCCCGCGCCTTCGGCGGCGCCCTCCGCGACCTGCACCTGGACCACACCGACGACCCCGGCTCGGCGCCGAACACCTACCG
CGTCCTCAGCGACGACGAGGAGCCGCTGGTCTTCGGTGCCGACGGCCGCATGGTCGCCCACCGGCACCCGCACGAGGAGG
AAGCGCAGTGA

Protein sequence :
MNGAGRGDRPIGLRVSEVTVAYNNGHVALHDASFELGPGTICALVGVNGSGKSTLFKAIMGFVKPARGGVTIGELPVKRA
HRENLVAYVPQAEDVDWDFPVSVWDVVLMGRYGSMNFLRIPRQADKRIATESLERVGMLGFKDRQIGELSGGQKKRVFLA
RALAQRGRILLLDEPFTGVDVKTEASIIELLRELRDEGHLVLVSTHDLGSIPSFCDRVVIINRTVLAAGPTHATFTQENL
ARAFGGALRDLHLDHTDDPGSAPNTYRVLSDDEEPLVFGADGRMVAHRHPHEEEAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-72 60
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-72 60
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-72 59
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-73 59
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-73 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30920 YP_005447148.1 iron ABC transporter ATP-binding protein BAC0440 Protein 2e-86 63
PSMK_30920 YP_005447148.1 iron ABC transporter ATP-binding protein BAC0350 Protein 2e-73 59
PSMK_30920 YP_005447148.1 iron ABC transporter ATP-binding protein BAC0400 Protein 1e-44 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSMK_30920 YP_005447148.1 iron ABC transporter ATP-binding protein VFG0526 Protein 2e-73 59